RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 LCE5AQ5TCM9 118 aa5.19□□□□□ -1.58
LIG1-208ENST00000595758 MT1GP13640 62 aa5.13□□□□□ -1.59
LIG1-208ENST00000595758 KRTAP12-3P60328 96 aa5.13□□□□□ -1.59
LIG1-208ENST00000595758 ROMO1P60602 79 aa5.13□□□□□ -1.59
LIG1-208ENST00000595758 LCE3BQ5TA77 95 aa5.13□□□□□ -1.59
LIG1-208ENST00000595758 MT1LQ93083 61 aa5.12□□□□□ -1.59
LIG1-208ENST00000595758 KRTAP2-2Q9BYT5 123 aa5.12□□□□□ -1.59
LIG1-208ENST00000595758 KRTAP2-1Q9BYU5 128 aa5.12□□□□□ -1.59
LIG1-208ENST00000595758 KRTAP23-1A1A580 65 aa5.09□□□□□ -1.59
LIG1-208ENST00000595758 PP632Q6XCG6 107 aa5.09□□□□□ -1.59
LIG1-208ENST00000595758 MT1MQ8N339 61 aa5.05□□□□□ -1.6
LIG1-208ENST00000595758 BRK1Q8WUW1 75 aa4.98□□□□□ -1.61
LIG1-208ENST00000595758 DSTQ03001 7570 aaKnown RBP4.97□□□□□ -1.61
LIG1-208ENST00000595758 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
LIG1-208ENST00000595758 KRTAP15-1Q3LI76 137 aa4.89□□□□□ -1.63
LIG1-208ENST00000595758 KRTAP4-7Q9BYR0 210 aa4.89□□□□□ -1.63
LIG1-208ENST00000595758 KRTAP19-4Q3LI73 84 aa4.86□□□□□ -1.63
LIG1-208ENST00000595758 LCE3CQ5T5A8 94 aa4.75□□□□□ -1.65
LIG1-208ENST00000595758 PMAIP1Q13794 54 aa4.71□□□□□ -1.66
LIG1-208ENST00000595758 LCE4AQ5TA78 99 aa4.7□□□□□ -1.66
LIG1-208ENST00000595758 KRTAP4-9Q9BYQ8 210 aa4.7□□□□□ -1.66
LIG1-208ENST00000595758 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.67
LIG1-208ENST00000595758 LOC100996750A0A140TA64 210 aa4.62□□□□□ -1.67
LIG1-208ENST00000595758 LCE1DQ5T752 114 aa4.62□□□□□ -1.67
LIG1-208ENST00000595758 MT4P47944 62 aa4.61□□□□□ -1.67
LIG1-208ENST00000595758 KRTAP5-5Q701N2 237 aaPredicted RBP4.59□□□□□ -1.67
LIG1-208ENST00000595758 HMCN1Q96RW7 5635 aa4.59□□□□□ -1.68
LIG1-208ENST00000595758 PRO0628Q9UI54 55 aa4.56□□□□□ -1.68
LIG1-208ENST00000595758 KRTAP4-6Q9BYQ5 205 aa4.51□□□□□ -1.69
LIG1-208ENST00000595758 GPR98Q8WXG9 6306 aa4.47□□□□□ -1.69
LIG1-208ENST00000595758 PRAC1Q96KF2 57 aa4.47□□□□□ -1.69
LIG1-208ENST00000595758 KRTAP9-6A8MVA2 160 aa4.46□□□□□ -1.7
LIG1-208ENST00000595758 KRTAP12-4P60329 112 aa4.44□□□□□ -1.7
LIG1-208ENST00000595758 SPRR5A0A1B0GTR4 108 aa4.39□□□□□ -1.71
LIG1-208ENST00000595758 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
LIG1-208ENST00000595758 MT1AP04731 61 aa4.37□□□□□ -1.71
LIG1-208ENST00000595758 KRTAP20-2Q3LI61 65 aa4.37□□□□□ -1.71
LIG1-208ENST00000595758 AHNAK2Q8IVF2 5795 aa4.35□□□□□ -1.71
LIG1-208ENST00000595758 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
LIG1-208ENST00000595758 KTN1-AS1Q86SY8 53 aa4.3□□□□□ -1.72
LIG1-208ENST00000595758 KRTAP5-3Q6L8H2 238 aa4.23□□□□□ -1.73
LIG1-208ENST00000595758 KRTAP9-4Q9BYQ2 154 aa4.2□□□□□ -1.74
LIG1-208ENST00000595758 KRTAP5-10Q6L8G5 202 aa4.15□□□□□ -1.75
LIG1-208ENST00000595758 KRTAP5-2Q701N4 177 aa4.12□□□□□ -1.75
LIG1-208ENST00000595758 SVIPQ8NHG7 77 aa4.11□□□□□ -1.75
LIG1-208ENST00000595758 KRTAP6-2Q3LI66 62 aa4.09□□□□□ -1.75
LIG1-208ENST00000595758 MT3P25713 68 aa4□□□□□ -1.77
LIG1-208ENST00000595758 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
LIG1-208ENST00000595758 KRTAP4-11Q9BYQ6 195 aa3.94□□□□□ -1.78
LIG1-208ENST00000595758 KRTAP5-8O75690 187 aa3.78□□□□□ -1.8
LIG1-208ENST00000595758 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
LIG1-208ENST00000595758 LUZP6Q538Z0 58 aa3.75□□□□□ -1.81
LIG1-208ENST00000595758 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
LIG1-208ENST00000595758 MUC5ACP98088 5654 aa3.64□□□□□ -1.83
LIG1-208ENST00000595758 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
LIG1-208ENST00000595758 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
LIG1-208ENST00000595758 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
LIG1-208ENST00000595758 MUC5BQ9HC84 5762 aaPredicted RBP3.55□□□□□ -1.84
LIG1-208ENST00000595758 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
LIG1-208ENST00000595758 H3BS24 57 aa3.47□□□□□ -1.85
LIG1-208ENST00000595758 LCE1BQ5T7P3 118 aa3.38□□□□□ -1.87
LIG1-208ENST00000595758 KRTAP4-2Q9BYR5 136 aa3.37□□□□□ -1.87
LIG1-208ENST00000595758 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
LIG1-208ENST00000595758 LCE3EQ5T5B0 92 aa3.32□□□□□ -1.88
LIG1-208ENST00000595758 NDUFAF8A1L188 74 aa3.24□□□□□ -1.89
LIG1-208ENST00000595758 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.06□□□□□ -1.92
LIG1-208ENST00000595758 KRTAP5-11Q6L8G4 156 aa2.99□□□□□ -1.93
LIG1-208ENST00000595758 KRTAP4-12Q9BQ66 201 aa2.97□□□□□ -1.93
LIG1-208ENST00000595758 LCE1FQ5T754 118 aa2.85□□□□□ -1.95
LIG1-208ENST00000595758 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
LIG1-208ENST00000595758 A0A0A0MQY5 61 aa2.69□□□□□ -1.98
LIG1-208ENST00000595758 INE1O15225 51 aa2.64□□□□□ -1.99
LIG1-208ENST00000595758 PRM1P04553 51 aa2.63□□□□□ -1.99
LIG1-208ENST00000595758 PHGR1C9JFL3 82 aa2.58□□□□□ -2
LIG1-208ENST00000595758 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
LIG1-208ENST00000595758 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
LIG1-208ENST00000595758 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
LIG1-208ENST00000595758 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 56.7 ms