RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 MT1LQ93083 61 aa4.81□□□□□ -1.64
SMG6-215ENST00000574501 CRCT1Q9UGL9 99 aa4.79□□□□□ -1.64
SMG6-215ENST00000574501 KRTAP19-6Q3LI70 58 aa4.78□□□□□ -1.64
SMG6-215ENST00000574501 FCGBPQ9Y6R7 5405 aaPredicted RBP4.76□□□□□ -1.65
SMG6-215ENST00000574501 MT1EP04732 61 aa4.74□□□□□ -1.65
SMG6-215ENST00000574501 LOC100996750A0A140TA64 210 aa4.72□□□□□ -1.65
SMG6-215ENST00000574501 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
SMG6-215ENST00000574501 KRTAP19-4Q3LI73 84 aa4.67□□□□□ -1.66
SMG6-215ENST00000574501 KRTAP4-3Q9BYR4 195 aa4.65□□□□□ -1.67
SMG6-215ENST00000574501 MT1GP13640 62 aa4.61□□□□□ -1.67
SMG6-215ENST00000574501 MACF1Q9UPN3 7388 aaKnown RBP4.61□□□□□ -1.67
SMG6-215ENST00000574501 SYNE2Q8WXH0 6885 aaKnown RBP4.57□□□□□ -1.68
SMG6-215ENST00000574501 MUC12Q9UKN1 5478 aa4.49□□□□□ -1.69
SMG6-215ENST00000574501 KRTAP9-7A8MTY7 169 aa4.43□□□□□ -1.7
SMG6-215ENST00000574501 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.43□□□□□ -1.7
SMG6-215ENST00000574501 DSTQ03001 7570 aaKnown RBP4.42□□□□□ -1.7
SMG6-215ENST00000574501 KRTAP4-9Q9BYQ8 210 aa4.41□□□□□ -1.7
SMG6-215ENST00000574501 MT1MQ8N339 61 aa4.4□□□□□ -1.7
SMG6-215ENST00000574501 LCE3BQ5TA77 95 aa4.37□□□□□ -1.71
SMG6-215ENST00000574501 KRTAP19-3Q7Z4W3 81 aa4.33□□□□□ -1.72
SMG6-215ENST00000574501 SYNE1Q8NF91 8797 aaKnown RBP4.29□□□□□ -1.72
SMG6-215ENST00000574501 SPRR2FQ96RM1 72 aa4.28□□□□□ -1.72
SMG6-215ENST00000574501 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
SMG6-215ENST00000574501 MDN1Q9NU22 5596 aa4.25□□□□□ -1.73
SMG6-215ENST00000574501 KRTAP5-9P26371 169 aa4.24□□□□□ -1.73
SMG6-215ENST00000574501 PRM1P04553 51 aa4.21□□□□□ -1.74
SMG6-215ENST00000574501 MT1AP04731 61 aa4.17□□□□□ -1.74
SMG6-215ENST00000574501 LCE3DQ9BYE3 92 aa4.17□□□□□ -1.74
SMG6-215ENST00000574501 KRTAP5-5Q701N2 237 aaPredicted RBP4.17□□□□□ -1.74
SMG6-215ENST00000574501 LCE3EQ5T5B0 92 aa4.14□□□□□ -1.75
SMG6-215ENST00000574501 KRTAP6-1Q3LI64 71 aa4.13□□□□□ -1.75
SMG6-215ENST00000574501 LCE5AQ5TCM9 118 aa4.12□□□□□ -1.75
SMG6-215ENST00000574501 LCE1AQ5T7P2 110 aa4.09□□□□□ -1.75
SMG6-215ENST00000574501 SPRR2EP22531 72 aa4.09□□□□□ -1.76
SMG6-215ENST00000574501 SPRR2BP35325 72 aa4.09□□□□□ -1.76
SMG6-215ENST00000574501 SPRR2AP35326 72 aa4.09□□□□□ -1.76
SMG6-215ENST00000574501 NEBP20929 6669 aa4.08□□□□□ -1.76
SMG6-215ENST00000574501 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
SMG6-215ENST00000574501 SPRR2DP22532 72 aa3.94□□□□□ -1.78
SMG6-215ENST00000574501 KRTAP20-1Q3LI63 56 aa3.91□□□□□ -1.78
SMG6-215ENST00000574501 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.79
SMG6-215ENST00000574501 KRTAP9-4Q9BYQ2 154 aa3.73□□□□□ -1.81
SMG6-215ENST00000574501 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
SMG6-215ENST00000574501 GPR98Q8WXG9 6306 aa3.62□□□□□ -1.83
SMG6-215ENST00000574501 MT3P25713 68 aa3.55□□□□□ -1.84
SMG6-215ENST00000574501 KRTAP5-4Q6L8H1 288 aa3.49□□□□□ -1.85
SMG6-215ENST00000574501 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
SMG6-215ENST00000574501 LCE4AQ5TA78 99 aa3.46□□□□□ -1.86
SMG6-215ENST00000574501 MT4P47944 62 aa3.45□□□□□ -1.86
SMG6-215ENST00000574501 KRTAP4-6Q9BYQ5 205 aa3.41□□□□□ -1.86
SMG6-215ENST00000574501 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.86
SMG6-215ENST00000574501 LCE1DQ5T752 114 aa3.4□□□□□ -1.86
SMG6-215ENST00000574501 KRTAP20-2Q3LI61 65 aa3.29□□□□□ -1.88
SMG6-215ENST00000574501 KRTAP5-3Q6L8H2 238 aa3.17□□□□□ -1.9
SMG6-215ENST00000574501 KRTAP4-11Q9BYQ6 195 aa3.17□□□□□ -1.9
SMG6-215ENST00000574501 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
SMG6-215ENST00000574501 KRTAP5-7Q6L8G8 165 aa3.17□□□□□ -1.9
SMG6-215ENST00000574501 KRTAP5-2Q701N4 177 aa3.12□□□□□ -1.91
SMG6-215ENST00000574501 AHNAK2Q8IVF2 5795 aa3.11□□□□□ -1.91
SMG6-215ENST00000574501 KRTAP5-10Q6L8G5 202 aa3.08□□□□□ -1.92
SMG6-215ENST00000574501 AHNAKQ09666 5890 aaKnown RBP3.03□□□□□ -1.93
SMG6-215ENST00000574501 MUC5BQ9HC84 5762 aaPredicted RBP2.99□□□□□ -1.93
SMG6-215ENST00000574501 LCE1BQ5T7P3 118 aa2.93□□□□□ -1.94
SMG6-215ENST00000574501 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
SMG6-215ENST00000574501 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
SMG6-215ENST00000574501 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
SMG6-215ENST00000574501 KRTAP9-9Q9BYP9 154 aa2.75□□□□□ -1.97
SMG6-215ENST00000574501 KRTAP4-2Q9BYR5 136 aa2.67□□□□□ -1.98
SMG6-215ENST00000574501 KRTAP21-1Q3LI58 79 aa2.62□□□□□ -1.99
SMG6-215ENST00000574501 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
SMG6-215ENST00000574501 MUC19Q7Z5P9 8384 aa2.62□□□□□ -1.99
SMG6-215ENST00000574501 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
SMG6-215ENST00000574501 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2
SMG6-215ENST00000574501 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.46□□□□□ -2.02
SMG6-215ENST00000574501 KRTAP4-12Q9BQ66 201 aa2.35□□□□□ -2.03
SMG6-215ENST00000574501 KRTAP5-11Q6L8G4 156 aa2.28□□□□□ -2.04
SMG6-215ENST00000574501 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
SMG6-215ENST00000574501 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 247.7 ms