RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C10orf95Q9H7T3 257 aa3.65□□□□□ -1.83
VPS35-211ENST00000569950 A6NED7 52 aa3.6□□□□□ -1.83
VPS35-211ENST00000569950 KRTAP8-1Q8IUC2 63 aa3.57□□□□□ -1.84
VPS35-211ENST00000569950 MUC12Q9UKN1 5478 aa3.56□□□□□ -1.84
VPS35-211ENST00000569950 CDC42SE1Q9NRR8 79 aa3.54□□□□□ -1.84
VPS35-211ENST00000569950 SPRR2FQ96RM1 72 aa3.53□□□□□ -1.84
VPS35-211ENST00000569950 NEBP20929 6669 aa3.53□□□□□ -1.84
VPS35-211ENST00000569950 KRTAP19-7Q3SYF9 63 aa3.52□□□□□ -1.85
VPS35-211ENST00000569950 MDN1Q9NU22 5596 aa3.51□□□□□ -1.85
VPS35-211ENST00000569950 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
VPS35-211ENST00000569950 TNP1P09430 55 aa3.48□□□□□ -1.85
VPS35-211ENST00000569950 LCE1AQ5T7P2 110 aa3.48□□□□□ -1.85
VPS35-211ENST00000569950 MT1EP04732 61 aa3.46□□□□□ -1.86
VPS35-211ENST00000569950 K7ERS5 55 aa3.45□□□□□ -1.86
VPS35-211ENST00000569950 KRTAP19-5Q3LI72 72 aa3.45□□□□□ -1.86
VPS35-211ENST00000569950 KRTAP25-1Q3LHN0 102 aa3.42□□□□□ -1.86
VPS35-211ENST00000569950 SPRR2EP22531 72 aa3.41□□□□□ -1.86
VPS35-211ENST00000569950 SPRR2BP35325 72 aa3.41□□□□□ -1.86
VPS35-211ENST00000569950 SPRR2AP35326 72 aa3.41□□□□□ -1.86
VPS35-211ENST00000569950 ROMO1P60602 79 aa3.37□□□□□ -1.87
VPS35-211ENST00000569950 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.87
VPS35-211ENST00000569950 MT1LQ93083 61 aa3.34□□□□□ -1.87
VPS35-211ENST00000569950 KRTAP12-3P60328 96 aa3.32□□□□□ -1.88
VPS35-211ENST00000569950 SPRR2DP22532 72 aa3.29□□□□□ -1.88
VPS35-211ENST00000569950 MT1GP13640 62 aa3.28□□□□□ -1.88
VPS35-211ENST00000569950 LUZP6Q538Z0 58 aa3.28□□□□□ -1.88
VPS35-211ENST00000569950 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
VPS35-211ENST00000569950 MT1MQ8N339 61 aa3.27□□□□□ -1.89
VPS35-211ENST00000569950 PRAC1Q96KF2 57 aa3.27□□□□□ -1.89
VPS35-211ENST00000569950 KRTAP20-1Q3LI63 56 aa3.26□□□□□ -1.89
VPS35-211ENST00000569950 KRTAP2-3P0C7H8 128 aa3.24□□□□□ -1.89
VPS35-211ENST00000569950 KRTAP2-4Q9BYR9 128 aa3.24□□□□□ -1.89
VPS35-211ENST00000569950 KRTAP4-3Q9BYR4 195 aa3.22□□□□□ -1.89
VPS35-211ENST00000569950 PP632Q6XCG6 107 aa3.2□□□□□ -1.9
VPS35-211ENST00000569950 KRTAP2-2Q9BYT5 123 aa3.15□□□□□ -1.91
VPS35-211ENST00000569950 KRTAP2-1Q9BYU5 128 aa3.15□□□□□ -1.91
VPS35-211ENST00000569950 DSTQ03001 7570 aaKnown RBP3.15□□□□□ -1.91
VPS35-211ENST00000569950 LCE3CQ5T5A8 94 aa3.1□□□□□ -1.91
VPS35-211ENST00000569950 KRTAP5-11Q6L8G4 156 aa3.1□□□□□ -1.91
VPS35-211ENST00000569950 NDUFAF8A1L188 74 aa3.05□□□□□ -1.92
VPS35-211ENST00000569950 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
VPS35-211ENST00000569950 KRTAP9-6A8MVA2 160 aa3.02□□□□□ -1.93
VPS35-211ENST00000569950 KRTAP5-4Q6L8H1 288 aa3.01□□□□□ -1.93
VPS35-211ENST00000569950 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
VPS35-211ENST00000569950 HMCN1Q96RW7 5635 aa2.91□□□□□ -1.94
VPS35-211ENST00000569950 SYNE1Q8NF91 8797 aaKnown RBP2.87□□□□□ -1.95
VPS35-211ENST00000569950 MT4P47944 62 aa2.86□□□□□ -1.95
VPS35-211ENST00000569950 SPRR5A0A1B0GTR4 108 aa2.85□□□□□ -1.95
VPS35-211ENST00000569950 MT1AP04731 61 aa2.83□□□□□ -1.96
VPS35-211ENST00000569950 KRTAP6-1Q3LI64 71 aa2.83□□□□□ -1.96
VPS35-211ENST00000569950 MT3P25713 68 aa2.82□□□□□ -1.96
VPS35-211ENST00000569950 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
VPS35-211ENST00000569950 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
VPS35-211ENST00000569950 KRTAP12-4P60329 112 aa2.74□□□□□ -1.97
VPS35-211ENST00000569950 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
VPS35-211ENST00000569950 AHNAK2Q8IVF2 5795 aa2.72□□□□□ -1.97
VPS35-211ENST00000569950 INE1O15225 51 aa2.69□□□□□ -1.98
VPS35-211ENST00000569950 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
VPS35-211ENST00000569950 LCE1FQ5T754 118 aa2.65□□□□□ -1.99
VPS35-211ENST00000569950 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
VPS35-211ENST00000569950 GPR98Q8WXG9 6306 aa2.62□□□□□ -1.99
VPS35-211ENST00000569950 KRTAP5-10Q6L8G5 202 aa2.62□□□□□ -1.99
VPS35-211ENST00000569950 OBSCNQ5VST9 7968 aa2.47□□□□□ -2.01
VPS35-211ENST00000569950 KRTAP5-7Q6L8G8 165 aa2.46□□□□□ -2.02
VPS35-211ENST00000569950 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
VPS35-211ENST00000569950 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
VPS35-211ENST00000569950 MUC5ACP98088 5654 aa2.3□□□□□ -2.04
VPS35-211ENST00000569950 LCE3DQ9BYE3 92 aa2.24□□□□□ -2.05
VPS35-211ENST00000569950 MUC5BQ9HC84 5762 aaPredicted RBP2.2□□□□□ -2.06
VPS35-211ENST00000569950 LCE1CQ5T751 118 aa2.15□□□□□ -2.07
VPS35-211ENST00000569950 LCE1BQ5T7P3 118 aa2.15□□□□□ -2.07
VPS35-211ENST00000569950 AHNAKQ09666 5890 aaKnown RBP2.14□□□□□ -2.07
VPS35-211ENST00000569950 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
VPS35-211ENST00000569950 PRM1P04553 51 aa1.76□□□□□ -2.13
VPS35-211ENST00000569950 PHGR1C9JFL3 82 aa1.66□□□□□ -2.14
VPS35-211ENST00000569950 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
VPS35-211ENST00000569950 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
VPS35-211ENST00000569950 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 80.7 ms