RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 KRTAP2-1Q9BYU5 128 aa4.19□□□□□ -1.74
VPS9D1-206ENST00000567379 KRTAP12-3P60328 96 aa4.12□□□□□ -1.75
VPS9D1-206ENST00000567379 KRTAP4-8A0A0G2JLE6 195 aa4.1□□□□□ -1.75
VPS9D1-206ENST00000567379 KRTAP4-8Q9BYQ9 185 aa4.1□□□□□ -1.75
VPS9D1-206ENST00000567379 KRTAP19-5Q3LI72 72 aa4.07□□□□□ -1.76
VPS9D1-206ENST00000567379 SPRR2EP22531 72 aa4.05□□□□□ -1.76
VPS9D1-206ENST00000567379 SPRR2BP35325 72 aa4.05□□□□□ -1.76
VPS9D1-206ENST00000567379 SPRR2AP35326 72 aa4.05□□□□□ -1.76
VPS9D1-206ENST00000567379 KRTAP15-1Q3LI76 137 aa4.05□□□□□ -1.76
VPS9D1-206ENST00000567379 KRTAP19-7Q3SYF9 63 aa3.98□□□□□ -1.77
VPS9D1-206ENST00000567379 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
VPS9D1-206ENST00000567379 MT1EP04732 61 aa3.93□□□□□ -1.78
VPS9D1-206ENST00000567379 SPRR2DP22532 72 aa3.93□□□□□ -1.78
VPS9D1-206ENST00000567379 KRTAP19-4Q3LI73 84 aa3.9□□□□□ -1.79
VPS9D1-206ENST00000567379 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
VPS9D1-206ENST00000567379 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
VPS9D1-206ENST00000567379 DSTQ03001 7570 aaKnown RBP3.89□□□□□ -1.79
VPS9D1-206ENST00000567379 LCE3BQ5TA77 95 aa3.86□□□□□ -1.79
VPS9D1-206ENST00000567379 MT1LQ93083 61 aa3.86□□□□□ -1.79
VPS9D1-206ENST00000567379 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
VPS9D1-206ENST00000567379 LUZP6Q538Z0 58 aa3.84□□□□□ -1.79
VPS9D1-206ENST00000567379 KRTAP19-3Q7Z4W3 81 aa3.78□□□□□ -1.8
VPS9D1-206ENST00000567379 AHNAK2Q8IVF2 5795 aa3.76□□□□□ -1.81
VPS9D1-206ENST00000567379 MT1GP13640 62 aa3.76□□□□□ -1.81
VPS9D1-206ENST00000567379 NDUFAF8A1L188 74 aa3.74□□□□□ -1.81
VPS9D1-206ENST00000567379 KRTAP4-9Q9BYQ8 210 aa3.73□□□□□ -1.81
VPS9D1-206ENST00000567379 HMCN1Q96RW7 5635 aa3.72□□□□□ -1.81
VPS9D1-206ENST00000567379 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.82
VPS9D1-206ENST00000567379 MT1MQ8N339 61 aa3.7□□□□□ -1.82
VPS9D1-206ENST00000567379 LCE5AQ5TCM9 118 aa3.68□□□□□ -1.82
VPS9D1-206ENST00000567379 A0A0A0MQY5 61 aa3.67□□□□□ -1.82
VPS9D1-206ENST00000567379 KRTAP5-10Q6L8G5 202 aa3.66□□□□□ -1.82
VPS9D1-206ENST00000567379 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
VPS9D1-206ENST00000567379 KRTAP4-3Q9BYR4 195 aa3.6□□□□□ -1.83
VPS9D1-206ENST00000567379 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
VPS9D1-206ENST00000567379 LCE1DQ5T752 114 aa3.59□□□□□ -1.83
VPS9D1-206ENST00000567379 LOC100996750A0A140TA64 210 aa3.49□□□□□ -1.85
VPS9D1-206ENST00000567379 MT4P47944 62 aa3.46□□□□□ -1.86
VPS9D1-206ENST00000567379 LCE4AQ5TA78 99 aa3.44□□□□□ -1.86
VPS9D1-206ENST00000567379 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
VPS9D1-206ENST00000567379 AHNAKQ09666 5890 aaKnown RBP3.32□□□□□ -1.88
VPS9D1-206ENST00000567379 KRTAP5-5Q701N2 237 aaPredicted RBP3.31□□□□□ -1.88
VPS9D1-206ENST00000567379 MT1AP04731 61 aa3.29□□□□□ -1.88
VPS9D1-206ENST00000567379 KRTAP4-6Q9BYQ5 205 aa3.28□□□□□ -1.88
VPS9D1-206ENST00000567379 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
VPS9D1-206ENST00000567379 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
VPS9D1-206ENST00000567379 MUC5ACP98088 5654 aa3.21□□□□□ -1.9
VPS9D1-206ENST00000567379 KRTAP4-12Q9BQ66 201 aa3.21□□□□□ -1.9
VPS9D1-206ENST00000567379 INE1O15225 51 aa3.19□□□□□ -1.9
VPS9D1-206ENST00000567379 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
VPS9D1-206ENST00000567379 KRTAP9-4Q9BYQ2 154 aa3.15□□□□□ -1.91
VPS9D1-206ENST00000567379 KRTAP12-4P60329 112 aa3.12□□□□□ -1.91
VPS9D1-206ENST00000567379 KRTAP9-9Q9BYP9 154 aa3.12□□□□□ -1.91
VPS9D1-206ENST00000567379 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
VPS9D1-206ENST00000567379 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
VPS9D1-206ENST00000567379 MT3P25713 68 aa3□□□□□ -1.93
VPS9D1-206ENST00000567379 KRTAP6-2Q3LI66 62 aa2.98□□□□□ -1.93
VPS9D1-206ENST00000567379 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
VPS9D1-206ENST00000567379 KRTAP5-8O75690 187 aa2.94□□□□□ -1.94
VPS9D1-206ENST00000567379 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
VPS9D1-206ENST00000567379 KRTAP5-2Q701N4 177 aa2.86□□□□□ -1.95
VPS9D1-206ENST00000567379 LCE3EQ5T5B0 92 aa2.84□□□□□ -1.95
VPS9D1-206ENST00000567379 OBSCNQ5VST9 7968 aa2.78□□□□□ -1.96
VPS9D1-206ENST00000567379 LCE1EQ5T753 118 aa2.58□□□□□ -2
VPS9D1-206ENST00000567379 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
VPS9D1-206ENST00000567379 KRTAP5-1Q6L8H4 278 aa2.55□□□□□ -2
VPS9D1-206ENST00000567379 PRM1P04553 51 aa2.48□□□□□ -2.01
VPS9D1-206ENST00000567379 LCE1BQ5T7P3 118 aa2.43□□□□□ -2.02
VPS9D1-206ENST00000567379 LCE1FQ5T754 118 aa2.4□□□□□ -2.03
VPS9D1-206ENST00000567379 LCE1CQ5T751 118 aa2.39□□□□□ -2.03
VPS9D1-206ENST00000567379 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
VPS9D1-206ENST00000567379 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
VPS9D1-206ENST00000567379 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
VPS9D1-206ENST00000567379 KRTAP5-11Q6L8G4 156 aa2.11□□□□□ -2.07
VPS9D1-206ENST00000567379 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
VPS9D1-206ENST00000567379 MUC19Q7Z5P9 8384 aa1.75□□□□□ -2.13
VPS9D1-206ENST00000567379 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
VPS9D1-206ENST00000567379 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 156.5 ms