RNA–Protein interactions for RNA: ENST00000565324.5

SMG1-211, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 12,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-211ENST00000565324 UBR4Q5T4S7 5183 aa1.52□□□□□ -2.17
SMG1-211ENST00000565324 LCE2AQ5TA79 106 aaPredicted RBP1.52□□□□□ -2.17
SMG1-211ENST00000565324 MT1MQ8N339 61 aa1.51□□□□□ -2.17
SMG1-211ENST00000565324 HMCN2Q8NDA2 5059 aa1.5□□□□□ -2.17
SMG1-211ENST00000565324 FSIP2Q5CZC0 6907 aa1.5□□□□□ -2.17
SMG1-211ENST00000565324 FAT4Q6V0I7 4981 aa1.5□□□□□ -2.17
SMG1-211ENST00000565324 MT4P47944 62 aa1.49□□□□□ -2.17
SMG1-211ENST00000565324 KRTAP9-6A0A140TA67 174 aa1.48□□□□□ -2.17
SMG1-211ENST00000565324 LCE1DQ5T752 114 aa1.48□□□□□ -2.17
SMG1-211ENST00000565324 LCE1BQ5T7P3 118 aa1.48□□□□□ -2.17
SMG1-211ENST00000565324 KRTAP2-3P0C7H8 128 aa1.47□□□□□ -2.17
SMG1-211ENST00000565324 KRTAP2-4Q9BYR9 128 aa1.47□□□□□ -2.17
SMG1-211ENST00000565324 KRTAP2-1Q9BYU5 128 aa1.47□□□□□ -2.17
SMG1-211ENST00000565324 MT1AP04731 61 aa1.47□□□□□ -2.17
SMG1-211ENST00000565324 SYNE2Q8WXH0 6885 aaKnown RBP1.46□□□□□ -2.18
SMG1-211ENST00000565324 MACF1Q9UPN3 7388 aaKnown RBP1.46□□□□□ -2.18
SMG1-211ENST00000565324 KRTAP19-2Q3LHN2 52 aa1.45□□□□□ -2.18
SMG1-211ENST00000565324 KRTAP4-7Q9BYR0 210 aa1.45□□□□□ -2.18
SMG1-211ENST00000565324 KRTAP19-6Q3LI70 58 aa1.42□□□□□ -2.18
SMG1-211ENST00000565324 LCE5AQ5TCM9 118 aa1.39□□□□□ -2.19
SMG1-211ENST00000565324 KRTAP6-2Q3LI66 62 aa1.38□□□□□ -2.19
SMG1-211ENST00000565324 LOC100996750A0A140TA64 210 aa1.38□□□□□ -2.19
SMG1-211ENST00000565324 RNF213Q63HN8 5207 aa1.37□□□□□ -2.19
SMG1-211ENST00000565324 KRTAP9-7A8MTY7 169 aa1.37□□□□□ -2.19
SMG1-211ENST00000565324 LCE4AQ5TA78 99 aa1.35□□□□□ -2.19
SMG1-211ENST00000565324 KRTAP20-1Q3LI63 56 aa1.35□□□□□ -2.19
SMG1-211ENST00000565324 KRTAP19-7Q3SYF9 63 aa1.35□□□□□ -2.19
SMG1-211ENST00000565324 LCE1AQ5T7P2 110 aa1.34□□□□□ -2.19
SMG1-211ENST00000565324 KRTAP4-3Q9BYR4 195 aa1.33□□□□□ -2.2
SMG1-211ENST00000565324 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.33□□□□□ -2.2
SMG1-211ENST00000565324 KRTAP4-9Q9BYQ8 210 aa1.32□□□□□ -2.2
SMG1-211ENST00000565324 LCE1CQ5T751 118 aa1.31□□□□□ -2.2
SMG1-211ENST00000565324 LCE1EQ5T753 118 aa1.31□□□□□ -2.2
SMG1-211ENST00000565324 LCE1FQ5T754 118 aa1.31□□□□□ -2.2
SMG1-211ENST00000565324 KRTAP6-3Q3LI67 103 aa1.3□□□□□ -2.2
SMG1-211ENST00000565324 KRTAP9-4Q9BYQ2 154 aa1.3□□□□□ -2.2
SMG1-211ENST00000565324 KRTAP2-2Q9BYT5 123 aa1.28□□□□□ -2.2
SMG1-211ENST00000565324 KRTAP6-1Q3LI64 71 aa1.27□□□□□ -2.21
SMG1-211ENST00000565324 OBSCNQ5VST9 7968 aa1.25□□□□□ -2.21
SMG1-211ENST00000565324 USH2AO75445 5202 aa1.25□□□□□ -2.21
SMG1-211ENST00000565324 KRTAP9-6A8MVA2 160 aa1.25□□□□□ -2.21
SMG1-211ENST00000565324 DSTQ03001 7570 aaKnown RBP1.23□□□□□ -2.21
SMG1-211ENST00000565324 KMT2DO14686 5537 aa1.23□□□□□ -2.21
SMG1-211ENST00000565324 SYNE1Q8NF91 8797 aaKnown RBP1.21□□□□□ -2.22
SMG1-211ENST00000565324 NEBP20929 6669 aa1.21□□□□□ -2.22
SMG1-211ENST00000565324 KRTAP5-9P26371 169 aa1.19□□□□□ -2.22
SMG1-211ENST00000565324 KRTAP9-9Q9BYP9 154 aa1.17□□□□□ -2.22
SMG1-211ENST00000565324 SSPOA2VEC9 5147 aa1.17□□□□□ -2.22
SMG1-211ENST00000565324 FCGBPQ9Y6R7 5405 aaPredicted RBP1.17□□□□□ -2.22
SMG1-211ENST00000565324 MUC12Q9UKN1 5478 aa1.16□□□□□ -2.22
SMG1-211ENST00000565324 KRTAP4-11Q9BYQ6 195 aa1.13□□□□□ -2.23
SMG1-211ENST00000565324 MDN1Q9NU22 5596 aa1.12□□□□□ -2.23
SMG1-211ENST00000565324 GPR98Q8WXG9 6306 aa1.09□□□□□ -2.24
SMG1-211ENST00000565324 KRTAP20-2Q3LI61 65 aa1.07□□□□□ -2.24
SMG1-211ENST00000565324 KRTAP4-6Q9BYQ5 205 aa1.01□□□□□ -2.25
SMG1-211ENST00000565324 MUC19Q7Z5P9 8384 aa0.98□□□□□ -2.25
SMG1-211ENST00000565324 AHNAK2Q8IVF2 5795 aa0.97□□□□□ -2.25
SMG1-211ENST00000565324 KRTAP5-5Q701N2 237 aaPredicted RBP0.96□□□□□ -2.26
SMG1-211ENST00000565324 KRTAP4-12Q9BQ66 201 aa0.95□□□□□ -2.26
SMG1-211ENST00000565324 KRTAP4-2Q9BYR5 136 aa0.95□□□□□ -2.26
SMG1-211ENST00000565324 KRTAP5-4Q6L8H1 288 aa0.95□□□□□ -2.26
SMG1-211ENST00000565324 KRTAP4-4Q9BYR3 166 aa0.94□□□□□ -2.26
SMG1-211ENST00000565324 HMCN1Q96RW7 5635 aa0.92□□□□□ -2.26
SMG1-211ENST00000565324 MUC5ACP98088 5654 aa0.91□□□□□ -2.26
SMG1-211ENST00000565324 KRTAP5-3Q6L8H2 238 aa0.89□□□□□ -2.27
SMG1-211ENST00000565324 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.88□□□□□ -2.27
SMG1-211ENST00000565324 AHNAKQ09666 5890 aaKnown RBP0.87□□□□□ -2.27
SMG1-211ENST00000565324 KRTAP5-2Q701N4 177 aa0.85□□□□□ -2.27
SMG1-211ENST00000565324 MUC5BQ9HC84 5762 aaPredicted RBP0.85□□□□□ -2.27
SMG1-211ENST00000565324 KRTAP5-8O75690 187 aa0.83□□□□□ -2.28
SMG1-211ENST00000565324 KRTAP5-10Q6L8G5 202 aa0.81□□□□□ -2.28
SMG1-211ENST00000565324 KRTAP5-7Q6L8G8 165 aa0.8□□□□□ -2.28
SMG1-211ENST00000565324 KRTAP5-1Q6L8H4 278 aa0.79□□□□□ -2.28
SMG1-211ENST00000565324 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
SMG1-211ENST00000565324 KRTAP5-11Q6L8G4 156 aa0.75□□□□□ -2.29
SMG1-211ENST00000565324 KRTAP21-1Q3LI58 79 aa0.67□□□□□ -2.3
SMG1-211ENST00000565324 KRTAP21-2Q3LI59 83 aa0.62□□□□□ -2.31
SMG1-211ENST00000565324 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 123.5 ms