RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 LINC00643Q86TS7 51 aa2.43□□□□□ -2.02
VPS4A-203ENST00000564399 LCE3AQ5TA76 89 aa2.41□□□□□ -2.02
VPS4A-203ENST00000564399 SCGB1A1P11684 91 aa2.4□□□□□ -2.03
VPS4A-203ENST00000564399 KRTAP5-5Q701N2 237 aaPredicted RBP2.4□□□□□ -2.03
VPS4A-203ENST00000564399 SYNE1Q8NF91 8797 aaKnown RBP2.36□□□□□ -2.03
VPS4A-203ENST00000564399 SPATA8Q6RVD6 105 aa2.36□□□□□ -2.03
VPS4A-203ENST00000564399 TNP1P09430 55 aa2.34□□□□□ -2.03
VPS4A-203ENST00000564399 KRTAP12-1P59990 96 aa2.34□□□□□ -2.03
VPS4A-203ENST00000564399 A0A0A0MQY5 61 aa2.33□□□□□ -2.04
VPS4A-203ENST00000564399 KRTAP5-8O75690 187 aa2.33□□□□□ -2.04
VPS4A-203ENST00000564399 SEC61GP60059 68 aa2.32□□□□□ -2.04
VPS4A-203ENST00000564399 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
VPS4A-203ENST00000564399 LCE1EQ5T753 118 aa2.32□□□□□ -2.04
VPS4A-203ENST00000564399 SERP1Q9Y6X1 66 aa2.32□□□□□ -2.04
VPS4A-203ENST00000564399 LOC105371267A0A1B0GV96 52 aa2.3□□□□□ -2.04
VPS4A-203ENST00000564399 SVIPQ8NHG7 77 aa2.3□□□□□ -2.04
VPS4A-203ENST00000564399 A0A1B0GU33 70 aa2.29□□□□□ -2.04
VPS4A-203ENST00000564399 KRTAP5-11Q6L8G4 156 aa2.28□□□□□ -2.04
VPS4A-203ENST00000564399 KRTAP5-2Q701N4 177 aa2.26□□□□□ -2.05
VPS4A-203ENST00000564399 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.25□□□□□ -2.05
VPS4A-203ENST00000564399 SNURFQ9Y675 71 aa2.25□□□□□ -2.05
VPS4A-203ENST00000564399 SMIM26A0A096LP01 95 aa2.23□□□□□ -2.05
VPS4A-203ENST00000564399 SMIM20Q8N5G0 67 aa2.23□□□□□ -2.05
VPS4A-203ENST00000564399 SPANXA2-OT1Q8N9U9 137 aa2.23□□□□□ -2.05
VPS4A-203ENST00000564399 OBSCNQ5VST9 7968 aa2.23□□□□□ -2.05
VPS4A-203ENST00000564399 PCP4L1A6NKN8 68 aa2.22□□□□□ -2.05
VPS4A-203ENST00000564399 A8MU10 97 aa2.21□□□□□ -2.06
VPS4A-203ENST00000564399 COA5Q86WW8 74 aa2.21□□□□□ -2.06
VPS4A-203ENST00000564399 KRTAP6-1Q3LI64 71 aa2.19□□□□□ -2.06
VPS4A-203ENST00000564399 MT1AP04731 61 aa2.18□□□□□ -2.06
VPS4A-203ENST00000564399 J3QR89 54 aa2.17□□□□□ -2.06
VPS4A-203ENST00000564399 KRTAP6-2Q3LI66 62 aa2.15□□□□□ -2.07
VPS4A-203ENST00000564399 SERP2Q8N6R1 65 aa2.15□□□□□ -2.07
VPS4A-203ENST00000564399 A0A1B0GU69 56 aa2.12□□□□□ -2.07
VPS4A-203ENST00000564399 KRTAP25-1Q3LHN0 102 aa2.12□□□□□ -2.07
VPS4A-203ENST00000564399 LCE3CQ5T5A8 94 aa2.1□□□□□ -2.07
VPS4A-203ENST00000564399 KRTAP5-1Q6L8H4 278 aa2.09□□□□□ -2.07
VPS4A-203ENST00000564399 NDUFAF8A1L188 74 aa2.08□□□□□ -2.08
VPS4A-203ENST00000564399 A0A1B0GV90 55 aa2.05□□□□□ -2.08
VPS4A-203ENST00000564399 LCE1FQ5T754 118 aa2.05□□□□□ -2.08
VPS4A-203ENST00000564399 KRTAP9-6A8MVA2 160 aa2□□□□□ -2.09
VPS4A-203ENST00000564399 PRR15LQ9BU68 103 aa1.99□□□□□ -2.09
VPS4A-203ENST00000564399 H7BZZ5 65 aa1.96□□□□□ -2.1
VPS4A-203ENST00000564399 PRAC1Q96KF2 57 aa1.95□□□□□ -2.1
VPS4A-203ENST00000564399 K7ERU9 68 aa1.93□□□□□ -2.1
VPS4A-203ENST00000564399 COX7CP15954 63 aa1.9□□□□□ -2.11
VPS4A-203ENST00000564399 UQCR11O14957 56 aa1.89□□□□□ -2.11
VPS4A-203ENST00000564399 K7ERS5 55 aa1.87□□□□□ -2.11
VPS4A-203ENST00000564399 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
VPS4A-203ENST00000564399 LCE1BQ5T7P3 118 aa1.86□□□□□ -2.11
VPS4A-203ENST00000564399 LINC01558Q9Y6Z2 57 aa1.86□□□□□ -2.11
VPS4A-203ENST00000564399 MIR22HGQ0VDD5 57 aa1.82□□□□□ -2.12
VPS4A-203ENST00000564399 RPS28P62857 69 aaKnown RBP1.81□□□□□ -2.12
VPS4A-203ENST00000564399 LCE3EQ5T5B0 92 aa1.78□□□□□ -2.12
VPS4A-203ENST00000564399 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
VPS4A-203ENST00000564399 LCE1CQ5T751 118 aa1.76□□□□□ -2.13
VPS4A-203ENST00000564399 ATP5EP56381 51 aaPredicted RBP1.72□□□□□ -2.13
VPS4A-203ENST00000564399 CDC42SE1Q9NRR8 79 aa1.72□□□□□ -2.13
VPS4A-203ENST00000564399 ANAPC13Q9BS18 74 aa1.68□□□□□ -2.14
VPS4A-203ENST00000564399 Q1T7F1 81 aa1.67□□□□□ -2.14
VPS4A-203ENST00000564399 ROMO1P60602 79 aa1.66□□□□□ -2.14
VPS4A-203ENST00000564399 CCDC179H3BU77 68 aa1.65□□□□□ -2.15
VPS4A-203ENST00000564399 PSPHP1O15172 72 aa1.63□□□□□ -2.15
VPS4A-203ENST00000564399 A6NED7 52 aa1.56□□□□□ -2.16
VPS4A-203ENST00000564399 TMEM258P61165 79 aa1.56□□□□□ -2.16
VPS4A-203ENST00000564399 V9GYY9 64 aa1.56□□□□□ -2.16
VPS4A-203ENST00000564399 LCE3DQ9BYE3 92 aa1.46□□□□□ -2.18
VPS4A-203ENST00000564399 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
VPS4A-203ENST00000564399 MUC19Q7Z5P9 8384 aa1.39□□□□□ -2.19
VPS4A-203ENST00000564399 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
VPS4A-203ENST00000564399 BRK1Q8WUW1 75 aa1.02□□□□□ -2.25
VPS4A-203ENST00000564399 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
VPS4A-203ENST00000564399 PMAIP1Q13794 54 aa0.9□□□□□ -2.27
VPS4A-203ENST00000564399 LUZP6Q538Z0 58 aa0.88□□□□□ -2.27
VPS4A-203ENST00000564399 PRM1P04553 51 aa0.83□□□□□ -2.28
VPS4A-203ENST00000564399 KTN1-AS1Q86SY8 53 aa0.56□□□□□ -2.32
VPS4A-203ENST00000564399 PRO0628Q9UI54 55 aa0.49□□□□□ -2.33
VPS4A-203ENST00000564399 INE1O15225 51 aa0.2□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 1250.3 ms