RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 SPRR2EP22531 72 aa3.3□□□□□ -1.88
UBR1-204ENST00000563239 SPRR2BP35325 72 aa3.3□□□□□ -1.88
UBR1-204ENST00000563239 SPRR2AP35326 72 aa3.3□□□□□ -1.88
UBR1-204ENST00000563239 LCE1AQ5T7P2 110 aa3.3□□□□□ -1.88
UBR1-204ENST00000563239 PRR15LQ9BU68 103 aa3.29□□□□□ -1.88
UBR1-204ENST00000563239 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
UBR1-204ENST00000563239 SPRR5A0A1B0GTR4 108 aa3.27□□□□□ -1.89
UBR1-204ENST00000563239 PRAC1Q96KF2 57 aa3.24□□□□□ -1.89
UBR1-204ENST00000563239 KRTAP19-7Q3SYF9 63 aa3.23□□□□□ -1.89
UBR1-204ENST00000563239 KRTAP5-10Q6L8G5 202 aa3.23□□□□□ -1.89
UBR1-204ENST00000563239 C10orf95Q9H7T3 257 aa3.23□□□□□ -1.89
UBR1-204ENST00000563239 UQCR11O14957 56 aa3.21□□□□□ -1.9
UBR1-204ENST00000563239 KRTAP5-7Q6L8G8 165 aa3.21□□□□□ -1.9
UBR1-204ENST00000563239 SPRR2DP22532 72 aa3.2□□□□□ -1.9
UBR1-204ENST00000563239 Q1T7F1 81 aa3.19□□□□□ -1.9
UBR1-204ENST00000563239 HMCN1Q96RW7 5635 aa3.19□□□□□ -1.9
UBR1-204ENST00000563239 MT1EP04732 61 aa3.18□□□□□ -1.9
UBR1-204ENST00000563239 PSPHP1O15172 72 aa3.16□□□□□ -1.9
UBR1-204ENST00000563239 MIR22HGQ0VDD5 57 aa3.16□□□□□ -1.9
UBR1-204ENST00000563239 KRTAP19-5Q3LI72 72 aa3.16□□□□□ -1.9
UBR1-204ENST00000563239 V9GYY9 64 aa3.16□□□□□ -1.9
UBR1-204ENST00000563239 TNP1P09430 55 aa3.13□□□□□ -1.91
UBR1-204ENST00000563239 LCE3AQ5TA76 89 aa3.13□□□□□ -1.91
UBR1-204ENST00000563239 KRTAP19-3Q7Z4W3 81 aa3.12□□□□□ -1.91
UBR1-204ENST00000563239 RPS28P62857 69 aaKnown RBP3.11□□□□□ -1.91
UBR1-204ENST00000563239 MT1LQ93083 61 aa3.06□□□□□ -1.92
UBR1-204ENST00000563239 AHNAKQ09666 5890 aaKnown RBP3.05□□□□□ -1.92
UBR1-204ENST00000563239 MT1GP13640 62 aa3.05□□□□□ -1.92
UBR1-204ENST00000563239 A6NED7 52 aa3.03□□□□□ -1.92
UBR1-204ENST00000563239 K7ERS5 55 aa3.02□□□□□ -1.93
UBR1-204ENST00000563239 KRTAP25-1Q3LHN0 102 aa3.02□□□□□ -1.93
UBR1-204ENST00000563239 MT1MQ8N339 61 aa3.02□□□□□ -1.93
UBR1-204ENST00000563239 MT3P25713 68 aa3.01□□□□□ -1.93
UBR1-204ENST00000563239 KRTAP12-3P60328 96 aa3□□□□□ -1.93
UBR1-204ENST00000563239 NDUFAF8A1L188 74 aa2.99□□□□□ -1.93
UBR1-204ENST00000563239 PP632Q6XCG6 107 aa2.98□□□□□ -1.93
UBR1-204ENST00000563239 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.94
UBR1-204ENST00000563239 KRTAP4-3Q9BYR4 195 aa2.96□□□□□ -1.94
UBR1-204ENST00000563239 CDC42SE1Q9NRR8 79 aa2.94□□□□□ -1.94
UBR1-204ENST00000563239 MUC5BQ9HC84 5762 aaPredicted RBP2.91□□□□□ -1.94
UBR1-204ENST00000563239 ROMO1P60602 79 aa2.89□□□□□ -1.95
UBR1-204ENST00000563239 MT4P47944 62 aa2.88□□□□□ -1.95
UBR1-204ENST00000563239 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
UBR1-204ENST00000563239 KRTAP5-4Q6L8H1 288 aa2.83□□□□□ -1.96
UBR1-204ENST00000563239 LCE1FQ5T754 118 aa2.82□□□□□ -1.96
UBR1-204ENST00000563239 LCE3CQ5T5A8 94 aa2.78□□□□□ -1.96
UBR1-204ENST00000563239 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
UBR1-204ENST00000563239 BRK1Q8WUW1 75 aa2.71□□□□□ -1.98
UBR1-204ENST00000563239 KRTAP9-6A8MVA2 160 aa2.67□□□□□ -1.98
UBR1-204ENST00000563239 KRTAP20-2Q3LI61 65 aa2.65□□□□□ -1.99
UBR1-204ENST00000563239 SYNE1Q8NF91 8797 aaKnown RBP2.64□□□□□ -1.99
UBR1-204ENST00000563239 KRTAP12-4P60329 112 aa2.62□□□□□ -1.99
UBR1-204ENST00000563239 MT1AP04731 61 aa2.59□□□□□ -1.99
UBR1-204ENST00000563239 KRTAP6-1Q3LI64 71 aa2.59□□□□□ -1.99
UBR1-204ENST00000563239 PMAIP1Q13794 54 aa2.55□□□□□ -2
UBR1-204ENST00000563239 LCE1EQ5T753 118 aa2.54□□□□□ -2
UBR1-204ENST00000563239 KRTAP5-2Q701N4 177 aa2.51□□□□□ -2.01
UBR1-204ENST00000563239 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
UBR1-204ENST00000563239 KRTAP6-2Q3LI66 62 aa2.45□□□□□ -2.02
UBR1-204ENST00000563239 PRO0628Q9UI54 55 aa2.45□□□□□ -2.02
UBR1-204ENST00000563239 KRTAP5-11Q6L8G4 156 aa2.42□□□□□ -2.02
UBR1-204ENST00000563239 LCE3EQ5T5B0 92 aa2.41□□□□□ -2.02
UBR1-204ENST00000563239 KTN1-AS1Q86SY8 53 aa2.32□□□□□ -2.04
UBR1-204ENST00000563239 KRTAP5-1Q6L8H4 278 aa2.23□□□□□ -2.05
UBR1-204ENST00000563239 OBSCNQ5VST9 7968 aa2.22□□□□□ -2.05
UBR1-204ENST00000563239 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.22□□□□□ -2.05
UBR1-204ENST00000563239 LUZP6Q538Z0 58 aa2.13□□□□□ -2.07
UBR1-204ENST00000563239 LCE3DQ9BYE3 92 aa2.05□□□□□ -2.08
UBR1-204ENST00000563239 LCE1CQ5T751 118 aa2□□□□□ -2.09
UBR1-204ENST00000563239 LCE1BQ5T7P3 118 aa2□□□□□ -2.09
UBR1-204ENST00000563239 PHGR1C9JFL3 82 aa1.93□□□□□ -2.1
UBR1-204ENST00000563239 KRTAP4-4Q9BYR3 166 aa1.86□□□□□ -2.11
UBR1-204ENST00000563239 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
UBR1-204ENST00000563239 INE1O15225 51 aa1.54□□□□□ -2.16
UBR1-204ENST00000563239 PRM1P04553 51 aa1.49□□□□□ -2.17
UBR1-204ENST00000563239 KRTAP21-1Q3LI58 79 aa1.46□□□□□ -2.18
UBR1-204ENST00000563239 MUC19Q7Z5P9 8384 aa1.39□□□□□ -2.19
UBR1-204ENST00000563239 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 78.2 ms