RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 SPRR2DP22532 72 aa2.57□□□□□ -2
TCF4-216ENST00000562680 KRTAP12-4P60329 112 aa2.54□□□□□ -2
TCF4-216ENST00000562680 KRTAP19-7Q3SYF9 63 aa2.51□□□□□ -2.01
TCF4-216ENST00000562680 MT3P25713 68 aa2.5□□□□□ -2.01
TCF4-216ENST00000562680 MT1MQ8N339 61 aa2.49□□□□□ -2.01
TCF4-216ENST00000562680 MUC2Q02817 5179 aa2.49□□□□□ -2.01
TCF4-216ENST00000562680 LCE1AQ5T7P2 110 aa2.45□□□□□ -2.02
TCF4-216ENST00000562680 KRTAP6-3Q3LI67 103 aa2.45□□□□□ -2.02
TCF4-216ENST00000562680 LCE3BQ5TA77 95 aa2.42□□□□□ -2.02
TCF4-216ENST00000562680 USH2AO75445 5202 aa2.4□□□□□ -2.03
TCF4-216ENST00000562680 KRTAP4-7Q9BYR0 210 aa2.39□□□□□ -2.03
TCF4-216ENST00000562680 FSIP2Q5CZC0 6907 aa2.38□□□□□ -2.03
TCF4-216ENST00000562680 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.37□□□□□ -2.03
TCF4-216ENST00000562680 KRTAP9-7A8MTY7 169 aa2.35□□□□□ -2.03
TCF4-216ENST00000562680 LCE5AQ5TCM9 118 aa2.34□□□□□ -2.03
TCF4-216ENST00000562680 LCE3DQ9BYE3 92 aa2.31□□□□□ -2.04
TCF4-216ENST00000562680 MT1AP04731 61 aa2.31□□□□□ -2.04
TCF4-216ENST00000562680 PRM1P04553 51 aa2.3□□□□□ -2.04
TCF4-216ENST00000562680 KRTAP4-3Q9BYR4 195 aa2.29□□□□□ -2.04
TCF4-216ENST00000562680 LCE3EQ5T5B0 92 aa2.28□□□□□ -2.04
TCF4-216ENST00000562680 KRTAP2-3P0C7H8 128 aa2.28□□□□□ -2.04
TCF4-216ENST00000562680 KRTAP2-4Q9BYR9 128 aa2.28□□□□□ -2.04
TCF4-216ENST00000562680 KRTAP2-1Q9BYU5 128 aa2.28□□□□□ -2.04
TCF4-216ENST00000562680 KRTAP5-9P26371 169 aa2.27□□□□□ -2.05
TCF4-216ENST00000562680 KRTAP20-1Q3LI63 56 aa2.25□□□□□ -2.05
TCF4-216ENST00000562680 LOC100996750A0A140TA64 210 aa2.24□□□□□ -2.05
TCF4-216ENST00000562680 GPR98Q8WXG9 6306 aa2.23□□□□□ -2.05
TCF4-216ENST00000562680 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
TCF4-216ENST00000562680 FCGBPQ9Y6R7 5405 aaPredicted RBP2.22□□□□□ -2.05
TCF4-216ENST00000562680 LCE4AQ5TA78 99 aa2.21□□□□□ -2.06
TCF4-216ENST00000562680 KRTAP2-2Q9BYT5 123 aa2.2□□□□□ -2.06
TCF4-216ENST00000562680 SYNE1Q8NF91 8797 aaKnown RBP2.19□□□□□ -2.06
TCF4-216ENST00000562680 KRTAP9-6A8MVA2 160 aa2.18□□□□□ -2.06
TCF4-216ENST00000562680 MT4P47944 62 aa2.18□□□□□ -2.06
TCF4-216ENST00000562680 SYNE2Q8WXH0 6885 aaKnown RBP2.17□□□□□ -2.06
TCF4-216ENST00000562680 KRTAP6-1Q3LI64 71 aa2.12□□□□□ -2.07
TCF4-216ENST00000562680 KRTAP9-4Q9BYQ2 154 aa2.12□□□□□ -2.07
TCF4-216ENST00000562680 MACF1Q9UPN3 7388 aaKnown RBP2.1□□□□□ -2.07
TCF4-216ENST00000562680 LCE1EQ5T753 118 aa2.07□□□□□ -2.08
TCF4-216ENST00000562680 KMT2DO14686 5537 aa2.06□□□□□ -2.08
TCF4-216ENST00000562680 NEBP20929 6669 aa2.05□□□□□ -2.08
TCF4-216ENST00000562680 KRTAP6-2Q3LI66 62 aa2.04□□□□□ -2.08
TCF4-216ENST00000562680 OBSCNQ5VST9 7968 aa2.02□□□□□ -2.09
TCF4-216ENST00000562680 MUC12Q9UKN1 5478 aa1.99□□□□□ -2.09
TCF4-216ENST00000562680 MDN1Q9NU22 5596 aa1.99□□□□□ -2.09
TCF4-216ENST00000562680 KRTAP4-9Q9BYQ8 210 aa1.99□□□□□ -2.09
TCF4-216ENST00000562680 LCE1DQ5T752 114 aa1.98□□□□□ -2.09
TCF4-216ENST00000562680 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
TCF4-216ENST00000562680 LCE1FQ5T754 118 aa1.97□□□□□ -2.09
TCF4-216ENST00000562680 DSTQ03001 7570 aaKnown RBP1.94□□□□□ -2.1
TCF4-216ENST00000562680 KRTAP20-2Q3LI61 65 aa1.9□□□□□ -2.1
TCF4-216ENST00000562680 KRTAP5-5Q701N2 237 aaPredicted RBP1.9□□□□□ -2.11
TCF4-216ENST00000562680 KRTAP5-4Q6L8H1 288 aa1.87□□□□□ -2.11
TCF4-216ENST00000562680 KRTAP4-6Q9BYQ5 205 aa1.85□□□□□ -2.11
TCF4-216ENST00000562680 KRTAP9-9Q9BYP9 154 aa1.73□□□□□ -2.13
TCF4-216ENST00000562680 KRTAP4-11Q9BYQ6 195 aa1.69□□□□□ -2.14
TCF4-216ENST00000562680 AHNAKQ09666 5890 aaKnown RBP1.67□□□□□ -2.14
TCF4-216ENST00000562680 LCE1CQ5T751 118 aa1.66□□□□□ -2.14
TCF4-216ENST00000562680 KRTAP5-2Q701N4 177 aa1.65□□□□□ -2.15
TCF4-216ENST00000562680 KRTAP5-3Q6L8H2 238 aa1.63□□□□□ -2.15
TCF4-216ENST00000562680 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
TCF4-216ENST00000562680 HMCN1Q96RW7 5635 aa1.59□□□□□ -2.15
TCF4-216ENST00000562680 MUC5BQ9HC84 5762 aaPredicted RBP1.58□□□□□ -2.16
TCF4-216ENST00000562680 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
TCF4-216ENST00000562680 MUC5ACP98088 5654 aa1.48□□□□□ -2.17
TCF4-216ENST00000562680 MUC19Q7Z5P9 8384 aa1.46□□□□□ -2.18
TCF4-216ENST00000562680 KRTAP5-8O75690 187 aa1.46□□□□□ -2.18
TCF4-216ENST00000562680 KRTAP5-10Q6L8G5 202 aa1.43□□□□□ -2.18
TCF4-216ENST00000562680 KRTAP4-12Q9BQ66 201 aa1.43□□□□□ -2.18
TCF4-216ENST00000562680 KRTAP4-2Q9BYR5 136 aa1.42□□□□□ -2.18
TCF4-216ENST00000562680 KRTAP5-1Q6L8H4 278 aa1.4□□□□□ -2.19
TCF4-216ENST00000562680 KRTAP4-4Q9BYR3 166 aa1.39□□□□□ -2.19
TCF4-216ENST00000562680 KRTAP5-11Q6L8G4 156 aa1.36□□□□□ -2.19
TCF4-216ENST00000562680 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.33□□□□□ -2.2
TCF4-216ENST00000562680 KRTAP21-2Q3LI59 83 aa1.24□□□□□ -2.21
TCF4-216ENST00000562680 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
TCF4-216ENST00000562680 PHGR1C9JFL3 82 aa1.11□□□□□ -2.23
TCF4-216ENST00000562680 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 114.4 ms