RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 TNXBP22105 4242 aa3.86□□□□□ -1.79
CSPG4P12-202ENST00000559989 KRTAP2-3P0C7H8 128 aa3.85□□□□□ -1.79
CSPG4P12-202ENST00000559989 KRTAP2-4Q9BYR9 128 aa3.85□□□□□ -1.79
CSPG4P12-202ENST00000559989 KRTAP2-1Q9BYU5 128 aa3.85□□□□□ -1.79
CSPG4P12-202ENST00000559989 KRTAP4-3Q9BYR4 195 aa3.82□□□□□ -1.8
CSPG4P12-202ENST00000559989 HYDINQ4G0P3 5121 aa3.82□□□□□ -1.8
CSPG4P12-202ENST00000559989 KRTAP6-2Q3LI66 62 aa3.8□□□□□ -1.8
CSPG4P12-202ENST00000559989 KRTAP4-9Q9BYQ8 210 aa3.79□□□□□ -1.8
CSPG4P12-202ENST00000559989 KIAA1109Q2LD37 5005 aa3.79□□□□□ -1.8
CSPG4P12-202ENST00000559989 KRTAP19-6Q3LI70 58 aa3.78□□□□□ -1.8
CSPG4P12-202ENST00000559989 EPPK1P58107 5090 aaKnown RBP3.75□□□□□ -1.81
CSPG4P12-202ENST00000559989 KRTAP20-1Q3LI63 56 aa3.7□□□□□ -1.82
CSPG4P12-202ENST00000559989 MYCBP2O75592 4640 aa3.68□□□□□ -1.82
CSPG4P12-202ENST00000559989 HMCN2Q8NDA2 5059 aa3.67□□□□□ -1.82
CSPG4P12-202ENST00000559989 UBR4Q5T4S7 5183 aa3.67□□□□□ -1.82
CSPG4P12-202ENST00000559989 KRTAP9-4Q9BYQ2 154 aa3.61□□□□□ -1.83
CSPG4P12-202ENST00000559989 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
CSPG4P12-202ENST00000559989 KRTAP9-2Q9BYQ4 174 aa3.6□□□□□ -1.83
CSPG4P12-202ENST00000559989 LPAP08519 4548 aa3.53□□□□□ -1.84
CSPG4P12-202ENST00000559989 RNF213Q63HN8 5207 aa3.52□□□□□ -1.85
CSPG4P12-202ENST00000559989 KRTAP6-1Q3LI64 71 aa3.51□□□□□ -1.85
CSPG4P12-202ENST00000559989 MUC17Q685J3 4493 aa3.51□□□□□ -1.85
CSPG4P12-202ENST00000559989 KRTAP19-7Q3SYF9 63 aa3.5□□□□□ -1.85
CSPG4P12-202ENST00000559989 KRTAP17-1Q9BYP8 105 aa3.49□□□□□ -1.85
CSPG4P12-202ENST00000559989 KRTAP2-2Q9BYT5 123 aa3.49□□□□□ -1.85
CSPG4P12-202ENST00000559989 KRTAP9-7A8MTY7 169 aa3.48□□□□□ -1.85
CSPG4P12-202ENST00000559989 KRTAP9-6A0A140TA67 174 aa3.41□□□□□ -1.86
CSPG4P12-202ENST00000559989 FAT4Q6V0I7 4981 aa3.41□□□□□ -1.86
CSPG4P12-202ENST00000559989 KRTAP19-2Q3LHN2 52 aa3.38□□□□□ -1.87
CSPG4P12-202ENST00000559989 KRTAP9-9Q9BYP9 154 aa3.37□□□□□ -1.87
CSPG4P12-202ENST00000559989 LRP2P98164 4655 aa3.33□□□□□ -1.88
CSPG4P12-202ENST00000559989 KRTAP6-3Q3LI67 103 aa3.29□□□□□ -1.88
CSPG4P12-202ENST00000559989 SYNE2Q8WXH0 6885 aaKnown RBP3.29□□□□□ -1.88
CSPG4P12-202ENST00000559989 LCE2AQ5TA79 106 aaPredicted RBP3.27□□□□□ -1.89
CSPG4P12-202ENST00000559989 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
CSPG4P12-202ENST00000559989 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
CSPG4P12-202ENST00000559989 SYNE1Q8NF91 8797 aaKnown RBP3.18□□□□□ -1.9
CSPG4P12-202ENST00000559989 USH2AO75445 5202 aa3.18□□□□□ -1.9
CSPG4P12-202ENST00000559989 KRTAP20-2Q3LI61 65 aa3.16□□□□□ -1.9
CSPG4P12-202ENST00000559989 FSIP2Q5CZC0 6907 aa3.08□□□□□ -1.92
CSPG4P12-202ENST00000559989 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.02□□□□□ -1.93
CSPG4P12-202ENST00000559989 SSPOA2VEC9 5147 aa2.87□□□□□ -1.95
CSPG4P12-202ENST00000559989 KRTAP4-4Q9BYR3 166 aa2.85□□□□□ -1.95
CSPG4P12-202ENST00000559989 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
CSPG4P12-202ENST00000559989 MUC2Q02817 5179 aa2.82□□□□□ -1.96
CSPG4P12-202ENST00000559989 NEBP20929 6669 aa2.78□□□□□ -1.96
CSPG4P12-202ENST00000559989 KRTAP4-6Q9BYQ5 205 aa2.74□□□□□ -1.97
CSPG4P12-202ENST00000559989 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
CSPG4P12-202ENST00000559989 KRTAP4-2Q9BYR5 136 aa2.72□□□□□ -1.97
CSPG4P12-202ENST00000559989 MDN1Q9NU22 5596 aa2.65□□□□□ -1.98
CSPG4P12-202ENST00000559989 DSTQ03001 7570 aaKnown RBP2.6□□□□□ -1.99
CSPG4P12-202ENST00000559989 FCGBPQ9Y6R7 5405 aaPredicted RBP2.58□□□□□ -2
CSPG4P12-202ENST00000559989 KMT2DO14686 5537 aa2.56□□□□□ -2
CSPG4P12-202ENST00000559989 KRTAP5-4Q6L8H1 288 aa2.53□□□□□ -2
CSPG4P12-202ENST00000559989 MACF1Q9UPN3 7388 aaKnown RBP2.51□□□□□ -2.01
CSPG4P12-202ENST00000559989 GPR98Q8WXG9 6306 aa2.5□□□□□ -2.01
CSPG4P12-202ENST00000559989 KRTAP5-5Q701N2 237 aaPredicted RBP2.49□□□□□ -2.01
CSPG4P12-202ENST00000559989 KRTAP5-9P26371 169 aa2.47□□□□□ -2.01
CSPG4P12-202ENST00000559989 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
CSPG4P12-202ENST00000559989 MUC12Q9UKN1 5478 aa2.31□□□□□ -2.04
CSPG4P12-202ENST00000559989 AHNAK2Q8IVF2 5795 aa2.2□□□□□ -2.06
CSPG4P12-202ENST00000559989 KRTAP5-3Q6L8H2 238 aa2.14□□□□□ -2.07
CSPG4P12-202ENST00000559989 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
CSPG4P12-202ENST00000559989 MUC5BQ9HC84 5762 aaPredicted RBP2.12□□□□□ -2.07
CSPG4P12-202ENST00000559989 HMCN1Q96RW7 5635 aa2.08□□□□□ -2.08
CSPG4P12-202ENST00000559989 AHNAKQ09666 5890 aaKnown RBP2.06□□□□□ -2.08
CSPG4P12-202ENST00000559989 MUC5ACP98088 5654 aa1.99□□□□□ -2.09
CSPG4P12-202ENST00000559989 KRTAP5-2Q701N4 177 aa1.97□□□□□ -2.09
CSPG4P12-202ENST00000559989 KRTAP5-10Q6L8G5 202 aa1.97□□□□□ -2.09
CSPG4P12-202ENST00000559989 KRTAP5-8O75690 187 aa1.84□□□□□ -2.12
CSPG4P12-202ENST00000559989 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
CSPG4P12-202ENST00000559989 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
CSPG4P12-202ENST00000559989 KRTAP5-11Q6L8G4 156 aa1.7□□□□□ -2.14
CSPG4P12-202ENST00000559989 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.59□□□□□ -2.16
CSPG4P12-202ENST00000559989 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
CSPG4P12-202ENST00000559989 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
CSPG4P12-202ENST00000559989 KRTAP5-7Q6L8G8 165 aa1.32□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 109.4 ms