RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 LCE4AQ5TA78 99 aa4.74□□□□□ -1.65
USP3-213ENST00000559711 KMT2DO14686 5537 aa4.72□□□□□ -1.65
USP3-213ENST00000559711 KRTAP19-7Q3SYF9 63 aa4.68□□□□□ -1.66
USP3-213ENST00000559711 CRCT1Q9UGL9 99 aa4.67□□□□□ -1.66
USP3-213ENST00000559711 LCE5AQ5TCM9 118 aa4.64□□□□□ -1.67
USP3-213ENST00000559711 SPRR5A0A1B0GTR4 108 aa4.61□□□□□ -1.67
USP3-213ENST00000559711 KRTAP9-7A8MTY7 169 aa4.6□□□□□ -1.67
USP3-213ENST00000559711 MT1EP04732 61 aa4.59□□□□□ -1.67
USP3-213ENST00000559711 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
USP3-213ENST00000559711 MT1LQ93083 61 aa4.51□□□□□ -1.69
USP3-213ENST00000559711 LCE3CQ5T5A8 94 aa4.5□□□□□ -1.69
USP3-213ENST00000559711 LUZP6Q538Z0 58 aa4.45□□□□□ -1.7
USP3-213ENST00000559711 SPRR2FQ96RM1 72 aa4.42□□□□□ -1.7
USP3-213ENST00000559711 NDUFAF8A1L188 74 aa4.4□□□□□ -1.71
USP3-213ENST00000559711 MACF1Q9UPN3 7388 aaKnown RBP4.4□□□□□ -1.71
USP3-213ENST00000559711 KRTAP19-3Q7Z4W3 81 aa4.39□□□□□ -1.71
USP3-213ENST00000559711 KRTAP5-9P26371 169 aa4.38□□□□□ -1.71
USP3-213ENST00000559711 MT1GP13640 62 aa4.37□□□□□ -1.71
USP3-213ENST00000559711 MUC12Q9UKN1 5478 aa4.36□□□□□ -1.71
USP3-213ENST00000559711 MT1MQ8N339 61 aa4.31□□□□□ -1.72
USP3-213ENST00000559711 KRTAP9-6A8MVA2 160 aa4.27□□□□□ -1.73
USP3-213ENST00000559711 KRTAP6-3Q3LI67 103 aa4.26□□□□□ -1.73
USP3-213ENST00000559711 LCE1AQ5T7P2 110 aa4.25□□□□□ -1.73
USP3-213ENST00000559711 SYNE2Q8WXH0 6885 aaKnown RBP4.24□□□□□ -1.73
USP3-213ENST00000559711 KRTAP4-3Q9BYR4 195 aa4.22□□□□□ -1.73
USP3-213ENST00000559711 MDN1Q9NU22 5596 aa4.19□□□□□ -1.74
USP3-213ENST00000559711 SPRR2EP22531 72 aa4.16□□□□□ -1.74
USP3-213ENST00000559711 SPRR2BP35325 72 aa4.16□□□□□ -1.74
USP3-213ENST00000559711 SPRR2AP35326 72 aa4.16□□□□□ -1.74
USP3-213ENST00000559711 SPRR2DP22532 72 aa4.01□□□□□ -1.77
USP3-213ENST00000559711 KRTAP2-3P0C7H8 128 aa3.99□□□□□ -1.77
USP3-213ENST00000559711 KRTAP2-4Q9BYR9 128 aa3.99□□□□□ -1.77
USP3-213ENST00000559711 KRTAP2-1Q9BYU5 128 aa3.99□□□□□ -1.77
USP3-213ENST00000559711 H3BS24 57 aa3.96□□□□□ -1.78
USP3-213ENST00000559711 DSTQ03001 7570 aaKnown RBP3.96□□□□□ -1.78
USP3-213ENST00000559711 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.79
USP3-213ENST00000559711 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
USP3-213ENST00000559711 NEBP20929 6669 aa3.85□□□□□ -1.79
USP3-213ENST00000559711 MT1AP04731 61 aa3.83□□□□□ -1.8
USP3-213ENST00000559711 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
USP3-213ENST00000559711 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.78□□□□□ -1.8
USP3-213ENST00000559711 KRTAP5-4Q6L8H1 288 aa3.69□□□□□ -1.82
USP3-213ENST00000559711 INE1O15225 51 aa3.65□□□□□ -1.83
USP3-213ENST00000559711 KRTAP2-2Q9BYT5 123 aa3.63□□□□□ -1.83
USP3-213ENST00000559711 SYNE1Q8NF91 8797 aaKnown RBP3.63□□□□□ -1.83
USP3-213ENST00000559711 KRTAP12-4P60329 112 aa3.59□□□□□ -1.84
USP3-213ENST00000559711 KRTAP20-1Q3LI63 56 aa3.59□□□□□ -1.84
USP3-213ENST00000559711 KRTAP6-2Q3LI66 62 aa3.48□□□□□ -1.85
USP3-213ENST00000559711 MT3P25713 68 aa3.47□□□□□ -1.85
USP3-213ENST00000559711 MT4P47944 62 aa3.47□□□□□ -1.85
USP3-213ENST00000559711 KRTAP20-2Q3LI61 65 aa3.43□□□□□ -1.86
USP3-213ENST00000559711 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
USP3-213ENST00000559711 HMCN1Q96RW7 5635 aa3.38□□□□□ -1.87
USP3-213ENST00000559711 KRTAP5-2Q701N4 177 aa3.36□□□□□ -1.87
USP3-213ENST00000559711 LCE3EQ5T5B0 92 aa3.3□□□□□ -1.88
USP3-213ENST00000559711 KRTAP5-11Q6L8G4 156 aa3.26□□□□□ -1.89
USP3-213ENST00000559711 KRTAP5-1Q6L8H4 278 aa3.16□□□□□ -1.9
USP3-213ENST00000559711 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
USP3-213ENST00000559711 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
USP3-213ENST00000559711 LCE1EQ5T753 118 aa3.02□□□□□ -1.93
USP3-213ENST00000559711 AHNAK2Q8IVF2 5795 aa2.91□□□□□ -1.94
USP3-213ENST00000559711 PRM1P04553 51 aa2.9□□□□□ -1.95
USP3-213ENST00000559711 KRTAP5-8O75690 187 aa2.85□□□□□ -1.95
USP3-213ENST00000559711 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.95
USP3-213ENST00000559711 LCE1CQ5T751 118 aa2.8□□□□□ -1.96
USP3-213ENST00000559711 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
USP3-213ENST00000559711 KRTAP5-7Q6L8G8 165 aa2.79□□□□□ -1.96
USP3-213ENST00000559711 MUC5ACP98088 5654 aa2.78□□□□□ -1.96
USP3-213ENST00000559711 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
USP3-213ENST00000559711 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
USP3-213ENST00000559711 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
USP3-213ENST00000559711 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
USP3-213ENST00000559711 AHNAKQ09666 5890 aaKnown RBP2.15□□□□□ -2.07
USP3-213ENST00000559711 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
USP3-213ENST00000559711 MUC19Q7Z5P9 8384 aa1.82□□□□□ -2.12
USP3-213ENST00000559711 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
USP3-213ENST00000559711 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 12.4 ms