RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 KRTAP2-4Q9BYR9 128 aa1.7□□□□□ -2.14
SNX1-205ENST00000559339 PRAC1Q96KF2 57 aa1.69□□□□□ -2.14
SNX1-205ENST00000559339 LINC01558Q9Y6Z2 57 aa1.69□□□□□ -2.14
SNX1-205ENST00000559339 NDUFAF8A1L188 74 aa1.68□□□□□ -2.14
SNX1-205ENST00000559339 UQCR11O14957 56 aa1.68□□□□□ -2.14
SNX1-205ENST00000559339 SPRR2DP22532 72 aa1.68□□□□□ -2.14
SNX1-205ENST00000559339 KRTAP2-2Q9BYT5 123 aa1.68□□□□□ -2.14
SNX1-205ENST00000559339 A8MU10 97 aa1.67□□□□□ -2.14
SNX1-205ENST00000559339 TNP1P09430 55 aa1.65□□□□□ -2.15
SNX1-205ENST00000559339 KRTAP2-1Q9BYU5 128 aa1.65□□□□□ -2.15
SNX1-205ENST00000559339 V9GYY9 64 aa1.65□□□□□ -2.15
SNX1-205ENST00000559339 K7ERS5 55 aa1.64□□□□□ -2.15
SNX1-205ENST00000559339 MIR22HGQ0VDD5 57 aa1.63□□□□□ -2.15
SNX1-205ENST00000559339 KRTAP19-7Q3SYF9 63 aa1.62□□□□□ -2.15
SNX1-205ENST00000559339 KRTAP19-3Q7Z4W3 81 aa1.62□□□□□ -2.15
SNX1-205ENST00000559339 PSPHP1O15172 72 aa1.61□□□□□ -2.15
SNX1-205ENST00000559339 MT1EP04732 61 aa1.61□□□□□ -2.15
SNX1-205ENST00000559339 Q1T7F1 81 aa1.61□□□□□ -2.15
SNX1-205ENST00000559339 KRTAP19-5Q3LI72 72 aa1.61□□□□□ -2.15
SNX1-205ENST00000559339 PP632Q6XCG6 107 aa1.61□□□□□ -2.15
SNX1-205ENST00000559339 C10orf95Q9H7T3 257 aa1.61□□□□□ -2.15
SNX1-205ENST00000559339 MT1GP13640 62 aa1.59□□□□□ -2.15
SNX1-205ENST00000559339 DSTQ03001 7570 aaKnown RBP1.59□□□□□ -2.16
SNX1-205ENST00000559339 LCE3AQ5TA76 89 aa1.58□□□□□ -2.16
SNX1-205ENST00000559339 A6NED7 52 aa1.57□□□□□ -2.16
SNX1-205ENST00000559339 KRTAP25-1Q3LHN0 102 aa1.57□□□□□ -2.16
SNX1-205ENST00000559339 RPS28P62857 69 aaKnown RBP1.56□□□□□ -2.16
SNX1-205ENST00000559339 KRTAP12-3P60328 96 aa1.55□□□□□ -2.16
SNX1-205ENST00000559339 MT1LQ93083 61 aa1.55□□□□□ -2.16
SNX1-205ENST00000559339 MT1MQ8N339 61 aa1.53□□□□□ -2.16
SNX1-205ENST00000559339 CDC42SE1Q9NRR8 79 aa1.53□□□□□ -2.16
SNX1-205ENST00000559339 LCE1FQ5T754 118 aa1.51□□□□□ -2.17
SNX1-205ENST00000559339 LCE1EQ5T753 118 aa1.5□□□□□ -2.17
SNX1-205ENST00000559339 ROMO1P60602 79 aa1.48□□□□□ -2.17
SNX1-205ENST00000559339 KRTAP4-3Q9BYR4 195 aa1.48□□□□□ -2.17
SNX1-205ENST00000559339 MT4P47944 62 aa1.46□□□□□ -2.18
SNX1-205ENST00000559339 LCE3CQ5T5A8 94 aa1.44□□□□□ -2.18
SNX1-205ENST00000559339 KRTAP5-4Q6L8H1 288 aa1.44□□□□□ -2.18
SNX1-205ENST00000559339 KRTAP5-11Q6L8G4 156 aa1.42□□□□□ -2.18
SNX1-205ENST00000559339 KRTAP12-4P60329 112 aa1.41□□□□□ -2.18
SNX1-205ENST00000559339 KRTAP5-5Q701N2 237 aaPredicted RBP1.4□□□□□ -2.19
SNX1-205ENST00000559339 HMCN1Q96RW7 5635 aa1.39□□□□□ -2.19
SNX1-205ENST00000559339 SPRR5A0A1B0GTR4 108 aa1.38□□□□□ -2.19
SNX1-205ENST00000559339 BRK1Q8WUW1 75 aa1.38□□□□□ -2.19
SNX1-205ENST00000559339 GPR98Q8WXG9 6306 aa1.36□□□□□ -2.19
SNX1-205ENST00000559339 KRTAP20-2Q3LI61 65 aa1.36□□□□□ -2.19
SNX1-205ENST00000559339 KRTAP9-6A8MVA2 160 aa1.34□□□□□ -2.19
SNX1-205ENST00000559339 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.34□□□□□ -2.19
SNX1-205ENST00000559339 KRTAP5-10Q6L8G5 202 aa1.33□□□□□ -2.2
SNX1-205ENST00000559339 SYNE1Q8NF91 8797 aaKnown RBP1.32□□□□□ -2.2
SNX1-205ENST00000559339 MT1AP04731 61 aa1.32□□□□□ -2.2
SNX1-205ENST00000559339 PMAIP1Q13794 54 aa1.31□□□□□ -2.2
SNX1-205ENST00000559339 KRTAP6-1Q3LI64 71 aa1.3□□□□□ -2.2
SNX1-205ENST00000559339 LCE3EQ5T5B0 92 aa1.3□□□□□ -2.2
SNX1-205ENST00000559339 AHNAK2Q8IVF2 5795 aa1.28□□□□□ -2.2
SNX1-205ENST00000559339 KRTAP5-7Q6L8G8 165 aa1.28□□□□□ -2.2
SNX1-205ENST00000559339 KRTAP6-2Q3LI66 62 aa1.25□□□□□ -2.21
SNX1-205ENST00000559339 KRTAP5-2Q701N4 177 aa1.25□□□□□ -2.21
SNX1-205ENST00000559339 OBSCNQ5VST9 7968 aa1.24□□□□□ -2.21
SNX1-205ENST00000559339 PRO0628Q9UI54 55 aa1.23□□□□□ -2.21
SNX1-205ENST00000559339 KRTAP5-8O75690 187 aa1.19□□□□□ -2.22
SNX1-205ENST00000559339 KRTAP5-1Q6L8H4 278 aa1.19□□□□□ -2.22
SNX1-205ENST00000559339 KTN1-AS1Q86SY8 53 aa1.16□□□□□ -2.22
SNX1-205ENST00000559339 KRTAP4-4Q9BYR3 166 aa1.12□□□□□ -2.23
SNX1-205ENST00000559339 LUZP6Q538Z0 58 aa1.1□□□□□ -2.23
SNX1-205ENST00000559339 LCE3DQ9BYE3 92 aa1.09□□□□□ -2.23
SNX1-205ENST00000559339 MUC5ACP98088 5654 aa1.09□□□□□ -2.24
SNX1-205ENST00000559339 MUC5BQ9HC84 5762 aaPredicted RBP1.08□□□□□ -2.24
SNX1-205ENST00000559339 LCE1BQ5T7P3 118 aa1.05□□□□□ -2.24
SNX1-205ENST00000559339 LCE1CQ5T751 118 aa1.04□□□□□ -2.24
SNX1-205ENST00000559339 AHNAKQ09666 5890 aaKnown RBP1.03□□□□□ -2.24
SNX1-205ENST00000559339 KRTAP21-2Q3LI59 83 aa0.85□□□□□ -2.27
SNX1-205ENST00000559339 PHGR1C9JFL3 82 aa0.8□□□□□ -2.28
SNX1-205ENST00000559339 PRM1P04553 51 aa0.75□□□□□ -2.29
SNX1-205ENST00000559339 MUC19Q7Z5P9 8384 aa0.74□□□□□ -2.29
SNX1-205ENST00000559339 INE1O15225 51 aa0.72□□□□□ -2.29
SNX1-205ENST00000559339 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
SNX1-205ENST00000559339 MUC16Q8WXI7 14507 aa0.51□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 8.4 ms