RNA–Protein interactions for RNA: ENST00000559222.5

CASC4-209, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 742 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-209ENST00000559222 KRTAP19-3Q7Z4W3 81 aa6.82□□□□□ -1.32
CASC4-209ENST00000559222 LCE5AQ5TCM9 118 aa6.81□□□□□ -1.32
CASC4-209ENST00000559222 RPS28P62857 69 aaKnown RBP6.79□□□□□ -1.32
CASC4-209ENST00000559222 DSTQ03001 7570 aaKnown RBP6.75□□□□□ -1.33
CASC4-209ENST00000559222 A6NED7 52 aa6.74□□□□□ -1.33
CASC4-209ENST00000559222 MT1LQ93083 61 aa6.7□□□□□ -1.34
CASC4-209ENST00000559222 K7ERS5 55 aa6.68□□□□□ -1.34
CASC4-209ENST00000559222 MT1GP13640 62 aa6.64□□□□□ -1.35
CASC4-209ENST00000559222 MT1MQ8N339 61 aa6.62□□□□□ -1.35
CASC4-209ENST00000559222 KRTAP25-1Q3LHN0 102 aa6.61□□□□□ -1.35
CASC4-209ENST00000559222 KRTAP12-3P60328 96 aa6.57□□□□□ -1.36
CASC4-209ENST00000559222 KRTAP4-3Q9BYR4 195 aa6.54□□□□□ -1.36
CASC4-209ENST00000559222 PP632Q6XCG6 107 aa6.53□□□□□ -1.36
CASC4-209ENST00000559222 KRTAP4-9Q9BYQ8 210 aa6.53□□□□□ -1.36
CASC4-209ENST00000559222 KRTAP4-12Q9BQ66 201 aa6.49□□□□□ -1.37
CASC4-209ENST00000559222 CDC42SE1Q9NRR8 79 aa6.47□□□□□ -1.37
CASC4-209ENST00000559222 KRTAP4-7Q9BYR0 210 aa6.46□□□□□ -1.38
CASC4-209ENST00000559222 ROMO1P60602 79 aa6.37□□□□□ -1.39
CASC4-209ENST00000559222 AHNAK2Q8IVF2 5795 aa6.36□□□□□ -1.39
CASC4-209ENST00000559222 HMCN1Q96RW7 5635 aa6.36□□□□□ -1.39
CASC4-209ENST00000559222 KRTAP23-1A1A580 65 aa6.33□□□□□ -1.4
CASC4-209ENST00000559222 KRTAP9-9Q9BYP9 154 aa6.32□□□□□ -1.4
CASC4-209ENST00000559222 KRTAP9-4Q9BYQ2 154 aa6.32□□□□□ -1.4
CASC4-209ENST00000559222 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
CASC4-209ENST00000559222 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.42
CASC4-209ENST00000559222 KRTAP5-10Q6L8G5 202 aa6.2□□□□□ -1.42
CASC4-209ENST00000559222 LCE4AQ5TA78 99 aa6.15□□□□□ -1.42
CASC4-209ENST00000559222 KRTAP5-4Q6L8H1 288 aa6.15□□□□□ -1.42
CASC4-209ENST00000559222 MT4P47944 62 aa6.14□□□□□ -1.43
CASC4-209ENST00000559222 LCE3CQ5T5A8 94 aa6.08□□□□□ -1.44
CASC4-209ENST00000559222 KRTAP5-7Q6L8G8 165 aa6.05□□□□□ -1.44
CASC4-209ENST00000559222 KRTAP5-5Q701N2 237 aaPredicted RBP6.05□□□□□ -1.44
CASC4-209ENST00000559222 BRK1Q8WUW1 75 aa6.05□□□□□ -1.44
CASC4-209ENST00000559222 KRTAP19-4Q3LI73 84 aa6.04□□□□□ -1.44
CASC4-209ENST00000559222 KRTAP5-3Q6L8H2 238 aa5.89□□□□□ -1.47
CASC4-209ENST00000559222 SPRR5A0A1B0GTR4 108 aa5.84□□□□□ -1.47
CASC4-209ENST00000559222 KRTAP9-6A8MVA2 160 aa5.84□□□□□ -1.47
CASC4-209ENST00000559222 KRTAP20-2Q3LI61 65 aa5.8□□□□□ -1.48
CASC4-209ENST00000559222 KRTAP4-2Q9BYR5 136 aa5.74□□□□□ -1.49
CASC4-209ENST00000559222 SYNE1Q8NF91 8797 aaKnown RBP5.72□□□□□ -1.49
CASC4-209ENST00000559222 KRTAP12-4P60329 112 aa5.72□□□□□ -1.49
CASC4-209ENST00000559222 MT1AP04731 61 aa5.68□□□□□ -1.5
CASC4-209ENST00000559222 KRTAP6-1Q3LI64 71 aa5.68□□□□□ -1.5
CASC4-209ENST00000559222 PMAIP1Q13794 54 aa5.65□□□□□ -1.5
CASC4-209ENST00000559222 KRTAP4-11Q9BYQ6 195 aa5.65□□□□□ -1.5
CASC4-209ENST00000559222 H3BS24 57 aa5.64□□□□□ -1.51
CASC4-209ENST00000559222 PRAC1Q96KF2 57 aa5.54□□□□□ -1.52
CASC4-209ENST00000559222 AHNAKQ09666 5890 aaKnown RBP5.47□□□□□ -1.53
CASC4-209ENST00000559222 KRTAP5-2Q701N4 177 aa5.44□□□□□ -1.54
CASC4-209ENST00000559222 PRO0628Q9UI54 55 aa5.4□□□□□ -1.54
CASC4-209ENST00000559222 KRTAP6-2Q3LI66 62 aa5.36□□□□□ -1.55
CASC4-209ENST00000559222 MUC5ACP98088 5654 aa5.36□□□□□ -1.55
CASC4-209ENST00000559222 MUC5BQ9HC84 5762 aaPredicted RBP5.31□□□□□ -1.56
CASC4-209ENST00000559222 KTN1-AS1Q86SY8 53 aa5.14□□□□□ -1.59
CASC4-209ENST00000559222 KRTAP5-8O75690 187 aa5.13□□□□□ -1.59
CASC4-209ENST00000559222 MT3P25713 68 aa5.13□□□□□ -1.59
CASC4-209ENST00000559222 OBSCNQ5VST9 7968 aa5□□□□□ -1.61
CASC4-209ENST00000559222 SVIPQ8NHG7 77 aa4.92□□□□□ -1.62
CASC4-209ENST00000559222 KRTAP5-1Q6L8H4 278 aa4.84□□□□□ -1.63
CASC4-209ENST00000559222 LCE1EQ5T753 118 aa4.63□□□□□ -1.67
CASC4-209ENST00000559222 LUZP6Q538Z0 58 aa4.44□□□□□ -1.7
CASC4-209ENST00000559222 LCE1BQ5T7P3 118 aa4.42□□□□□ -1.7
CASC4-209ENST00000559222 LCE3DQ9BYE3 92 aa4.4□□□□□ -1.71
CASC4-209ENST00000559222 LCE1CQ5T751 118 aa4.32□□□□□ -1.72
CASC4-209ENST00000559222 LCE3EQ5T5B0 92 aa4.18□□□□□ -1.74
CASC4-209ENST00000559222 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.96□□□□□ -1.78
CASC4-209ENST00000559222 KRTAP5-11Q6L8G4 156 aa3.91□□□□□ -1.78
CASC4-209ENST00000559222 NDUFAF8A1L188 74 aa3.86□□□□□ -1.79
CASC4-209ENST00000559222 KRTAP21-2Q3LI59 83 aa3.73□□□□□ -1.81
CASC4-209ENST00000559222 LCE1FQ5T754 118 aa3.68□□□□□ -1.82
CASC4-209ENST00000559222 PHGR1C9JFL3 82 aa3.64□□□□□ -1.83
CASC4-209ENST00000559222 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
CASC4-209ENST00000559222 PRM1P04553 51 aa3.32□□□□□ -1.88
CASC4-209ENST00000559222 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
CASC4-209ENST00000559222 INE1O15225 51 aa3.02□□□□□ -1.93
CASC4-209ENST00000559222 A0A0A0MQY5 61 aa3.01□□□□□ -1.93
CASC4-209ENST00000559222 KRTAP21-1Q3LI58 79 aa2.77□□□□□ -1.97
CASC4-209ENST00000559222 MUC16Q8WXI7 14507 aa2.23□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 110 ms