RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 MT1LQ93083 61 aa5.2□□□□□ -1.58
SHMT2-235ENST00000557740 A8MU10 97 aa5.18□□□□□ -1.58
SHMT2-235ENST00000557740 PSPHP1O15172 72 aa5.18□□□□□ -1.58
SHMT2-235ENST00000557740 LCE4AQ5TA78 99 aa5.18□□□□□ -1.58
SHMT2-235ENST00000557740 TNP1P09430 55 aa5.15□□□□□ -1.59
SHMT2-235ENST00000557740 MT4P47944 62 aa5.15□□□□□ -1.59
SHMT2-235ENST00000557740 LCE3AQ5TA76 89 aa5.15□□□□□ -1.59
SHMT2-235ENST00000557740 C10orf95Q9H7T3 257 aa5.15□□□□□ -1.59
SHMT2-235ENST00000557740 HMCN1Q96RW7 5635 aa5.15□□□□□ -1.59
SHMT2-235ENST00000557740 KRTAP4-3Q9BYR4 195 aa5.08□□□□□ -1.6
SHMT2-235ENST00000557740 UQCR11O14957 56 aa5.07□□□□□ -1.6
SHMT2-235ENST00000557740 A6NED7 52 aa5.03□□□□□ -1.6
SHMT2-235ENST00000557740 KRTAP5-4Q6L8H1 288 aa5.03□□□□□ -1.6
SHMT2-235ENST00000557740 AHNAK2Q8IVF2 5795 aa5.02□□□□□ -1.61
SHMT2-235ENST00000557740 MIR22HGQ0VDD5 57 aa5.01□□□□□ -1.61
SHMT2-235ENST00000557740 KRTAP12-3P60328 96 aa4.96□□□□□ -1.62
SHMT2-235ENST00000557740 KRTAP4-6Q9BYQ5 205 aa4.96□□□□□ -1.62
SHMT2-235ENST00000557740 KRTAP4-7Q9BYR0 210 aa4.93□□□□□ -1.62
SHMT2-235ENST00000557740 KRTAP5-10Q6L8G5 202 aa4.91□□□□□ -1.62
SHMT2-235ENST00000557740 CDC42SE1Q9NRR8 79 aa4.9□□□□□ -1.63
SHMT2-235ENST00000557740 PRO0628Q9UI54 55 aa4.88□□□□□ -1.63
SHMT2-235ENST00000557740 SVIPQ8NHG7 77 aa4.85□□□□□ -1.63
SHMT2-235ENST00000557740 BRK1Q8WUW1 75 aa4.84□□□□□ -1.63
SHMT2-235ENST00000557740 K7ERS5 55 aa4.83□□□□□ -1.64
SHMT2-235ENST00000557740 KRTAP25-1Q3LHN0 102 aa4.78□□□□□ -1.64
SHMT2-235ENST00000557740 KRTAP20-2Q3LI61 65 aa4.78□□□□□ -1.64
SHMT2-235ENST00000557740 KRTAP5-5Q701N2 237 aaPredicted RBP4.77□□□□□ -1.65
SHMT2-235ENST00000557740 KRTAP5-3Q6L8H2 238 aa4.76□□□□□ -1.65
SHMT2-235ENST00000557740 SPRR5A0A1B0GTR4 108 aa4.75□□□□□ -1.65
SHMT2-235ENST00000557740 KRTAP5-7Q6L8G8 165 aa4.74□□□□□ -1.65
SHMT2-235ENST00000557740 KRTAP12-4P60329 112 aa4.73□□□□□ -1.65
SHMT2-235ENST00000557740 LOC100996750A0A140TA64 210 aa4.67□□□□□ -1.66
SHMT2-235ENST00000557740 KRTAP19-4Q3LI73 84 aa4.65□□□□□ -1.67
SHMT2-235ENST00000557740 ROMO1P60602 79 aa4.59□□□□□ -1.67
SHMT2-235ENST00000557740 PMAIP1Q13794 54 aa4.58□□□□□ -1.68
SHMT2-235ENST00000557740 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
SHMT2-235ENST00000557740 KRTAP23-1A1A580 65 aa4.56□□□□□ -1.68
SHMT2-235ENST00000557740 LCE3CQ5T5A8 94 aa4.54□□□□□ -1.68
SHMT2-235ENST00000557740 SYNE1Q8NF91 8797 aaKnown RBP4.52□□□□□ -1.69
SHMT2-235ENST00000557740 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
SHMT2-235ENST00000557740 MT1AP04731 61 aa4.43□□□□□ -1.7
SHMT2-235ENST00000557740 KRTAP6-1Q3LI64 71 aa4.4□□□□□ -1.71
SHMT2-235ENST00000557740 KRTAP4-11Q9BYQ6 195 aa4.4□□□□□ -1.71
SHMT2-235ENST00000557740 KRTAP5-2Q701N4 177 aa4.38□□□□□ -1.71
SHMT2-235ENST00000557740 PRAC1Q96KF2 57 aa4.31□□□□□ -1.72
SHMT2-235ENST00000557740 KRTAP9-4Q9BYQ2 154 aa4.27□□□□□ -1.73
SHMT2-235ENST00000557740 KRTAP9-6A8MVA2 160 aa4.26□□□□□ -1.73
SHMT2-235ENST00000557740 KRTAP5-8O75690 187 aa4.24□□□□□ -1.73
SHMT2-235ENST00000557740 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
SHMT2-235ENST00000557740 AHNAKQ09666 5890 aaKnown RBP4.19□□□□□ -1.74
SHMT2-235ENST00000557740 MUC5ACP98088 5654 aa4.17□□□□□ -1.74
SHMT2-235ENST00000557740 MUC5BQ9HC84 5762 aaPredicted RBP4.17□□□□□ -1.74
SHMT2-235ENST00000557740 KRTAP9-9Q9BYP9 154 aa4.08□□□□□ -1.76
SHMT2-235ENST00000557740 MT3P25713 68 aa4.06□□□□□ -1.76
SHMT2-235ENST00000557740 OBSCNQ5VST9 7968 aa4.02□□□□□ -1.77
SHMT2-235ENST00000557740 KRTAP5-1Q6L8H4 278 aa3.96□□□□□ -1.78
SHMT2-235ENST00000557740 LCE1EQ5T753 118 aa3.75□□□□□ -1.81
SHMT2-235ENST00000557740 LCE1BQ5T7P3 118 aa3.57□□□□□ -1.84
SHMT2-235ENST00000557740 KRTAP4-2Q9BYR5 136 aa3.55□□□□□ -1.84
SHMT2-235ENST00000557740 LUZP6Q538Z0 58 aa3.53□□□□□ -1.84
SHMT2-235ENST00000557740 LCE1CQ5T751 118 aa3.48□□□□□ -1.85
SHMT2-235ENST00000557740 NDUFAF8A1L188 74 aa3.44□□□□□ -1.86
SHMT2-235ENST00000557740 KRTAP4-12Q9BQ66 201 aa3.28□□□□□ -1.88
SHMT2-235ENST00000557740 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
SHMT2-235ENST00000557740 H3BS24 57 aa3.21□□□□□ -1.9
SHMT2-235ENST00000557740 KRTAP5-11Q6L8G4 156 aa3.17□□□□□ -1.9
SHMT2-235ENST00000557740 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.13□□□□□ -1.91
SHMT2-235ENST00000557740 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
SHMT2-235ENST00000557740 A0A0A0MQY5 61 aa3.1□□□□□ -1.91
SHMT2-235ENST00000557740 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
SHMT2-235ENST00000557740 INE1O15225 51 aa2.96□□□□□ -1.94
SHMT2-235ENST00000557740 PHGR1C9JFL3 82 aa2.89□□□□□ -1.95
SHMT2-235ENST00000557740 KRTAP21-2Q3LI59 83 aa2.89□□□□□ -1.95
SHMT2-235ENST00000557740 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
SHMT2-235ENST00000557740 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
SHMT2-235ENST00000557740 PRM1P04553 51 aa2.39□□□□□ -2.03
SHMT2-235ENST00000557740 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
SHMT2-235ENST00000557740 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms