RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
SHMT2-230ENST00000557427 PRO2289Q9P1D8 64 aa5.16□□□□□ -1.58
SHMT2-230ENST00000557427 MT1XP80297 61 aa5.15□□□□□ -1.59
SHMT2-230ENST00000557427 KRTAP4-8A0A0G2JLE6 195 aa5.14□□□□□ -1.59
SHMT2-230ENST00000557427 KRTAP4-8Q9BYQ9 185 aa5.14□□□□□ -1.59
SHMT2-230ENST00000557427 TNP1P09430 55 aa5.02□□□□□ -1.61
SHMT2-230ENST00000557427 PP632Q6XCG6 107 aa5.01□□□□□ -1.61
SHMT2-230ENST00000557427 HMCN1Q96RW7 5635 aa5□□□□□ -1.61
SHMT2-230ENST00000557427 KRTAP23-1A1A580 65 aa4.98□□□□□ -1.61
SHMT2-230ENST00000557427 LCE1DQ5T752 114 aa4.97□□□□□ -1.61
SHMT2-230ENST00000557427 AHNAK2Q8IVF2 5795 aa4.97□□□□□ -1.61
SHMT2-230ENST00000557427 KRTAP5-10Q6L8G5 202 aa4.95□□□□□ -1.62
SHMT2-230ENST00000557427 KRTAP10-7P60409 375 aaPredicted RBP4.94□□□□□ -1.62
SHMT2-230ENST00000557427 KRTAP10-12P60413 245 aa4.88□□□□□ -1.63
SHMT2-230ENST00000557427 KRTAP5-7Q6L8G8 165 aa4.83□□□□□ -1.64
SHMT2-230ENST00000557427 MT4P47944 62 aa4.81□□□□□ -1.64
SHMT2-230ENST00000557427 LCE5AQ5TCM9 118 aa4.77□□□□□ -1.65
SHMT2-230ENST00000557427 KRTAP15-1Q3LI76 137 aa4.76□□□□□ -1.65
SHMT2-230ENST00000557427 LCE3AQ5TA76 89 aa4.75□□□□□ -1.65
SHMT2-230ENST00000557427 LCE4AQ5TA78 99 aa4.73□□□□□ -1.65
SHMT2-230ENST00000557427 KRTAP5-3Q6L8H2 238 aa4.67□□□□□ -1.66
SHMT2-230ENST00000557427 SPRR5A0A1B0GTR4 108 aa4.66□□□□□ -1.66
SHMT2-230ENST00000557427 KRTAP4-6Q9BYQ5 205 aa4.65□□□□□ -1.67
SHMT2-230ENST00000557427 KRTAP19-3Q7Z4W3 81 aa4.64□□□□□ -1.67
SHMT2-230ENST00000557427 KRTAP19-7Q3SYF9 63 aa4.6□□□□□ -1.67
SHMT2-230ENST00000557427 KRTAP5-4Q6L8H1 288 aa4.58□□□□□ -1.68
SHMT2-230ENST00000557427 MT1EP04732 61 aa4.57□□□□□ -1.68
SHMT2-230ENST00000557427 KRTAP12-3P60328 96 aa4.57□□□□□ -1.68
SHMT2-230ENST00000557427 KRTAP19-5Q3LI72 72 aa4.53□□□□□ -1.68
SHMT2-230ENST00000557427 NDUFAF8A1L188 74 aa4.44□□□□□ -1.7
SHMT2-230ENST00000557427 MT1GP13640 62 aa4.44□□□□□ -1.7
SHMT2-230ENST00000557427 LUZP6Q538Z0 58 aa4.43□□□□□ -1.7
SHMT2-230ENST00000557427 MT1MQ8N339 61 aa4.39□□□□□ -1.71
SHMT2-230ENST00000557427 KRTAP4-3Q9BYR4 195 aa4.38□□□□□ -1.71
SHMT2-230ENST00000557427 MT1LQ93083 61 aa4.37□□□□□ -1.71
SHMT2-230ENST00000557427 KRTAP20-2Q3LI61 65 aa4.36□□□□□ -1.71
SHMT2-230ENST00000557427 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
SHMT2-230ENST00000557427 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
SHMT2-230ENST00000557427 AHNAKQ09666 5890 aaKnown RBP4.27□□□□□ -1.73
SHMT2-230ENST00000557427 MUC5ACP98088 5654 aa4.24□□□□□ -1.73
SHMT2-230ENST00000557427 H3BS24 57 aa4.21□□□□□ -1.74
SHMT2-230ENST00000557427 KRTAP4-7Q9BYR0 210 aa4.21□□□□□ -1.74
SHMT2-230ENST00000557427 MUC5BQ9HC84 5762 aaPredicted RBP4.18□□□□□ -1.74
SHMT2-230ENST00000557427 KRTAP4-11Q9BYQ6 195 aa4.13□□□□□ -1.75
SHMT2-230ENST00000557427 KRTAP5-5Q701N2 237 aaPredicted RBP4.11□□□□□ -1.75
SHMT2-230ENST00000557427 KRTAP12-4P60329 112 aa4.08□□□□□ -1.76
SHMT2-230ENST00000557427 KRTAP5-8O75690 187 aa4.07□□□□□ -1.76
SHMT2-230ENST00000557427 KRTAP9-6A8MVA2 160 aa4.04□□□□□ -1.76
SHMT2-230ENST00000557427 SYNE1Q8NF91 8797 aaKnown RBP4.03□□□□□ -1.76
SHMT2-230ENST00000557427 LOC100996750A0A140TA64 210 aa3.99□□□□□ -1.77
SHMT2-230ENST00000557427 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
SHMT2-230ENST00000557427 KRTAP5-2Q701N4 177 aa3.9□□□□□ -1.79
SHMT2-230ENST00000557427 KRTAP9-9Q9BYP9 154 aa3.87□□□□□ -1.79
SHMT2-230ENST00000557427 OBSCNQ5VST9 7968 aa3.86□□□□□ -1.79
SHMT2-230ENST00000557427 INE1O15225 51 aa3.72□□□□□ -1.81
SHMT2-230ENST00000557427 MT1AP04731 61 aa3.71□□□□□ -1.82
SHMT2-230ENST00000557427 KRTAP6-1Q3LI64 71 aa3.71□□□□□ -1.82
SHMT2-230ENST00000557427 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
SHMT2-230ENST00000557427 KRTAP6-2Q3LI66 62 aa3.6□□□□□ -1.83
SHMT2-230ENST00000557427 KRTAP9-4Q9BYQ2 154 aa3.6□□□□□ -1.83
SHMT2-230ENST00000557427 MT3P25713 68 aa3.41□□□□□ -1.86
SHMT2-230ENST00000557427 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
SHMT2-230ENST00000557427 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
SHMT2-230ENST00000557427 LCE1EQ5T753 118 aa3.18□□□□□ -1.9
SHMT2-230ENST00000557427 KRTAP4-2Q9BYR5 136 aa3.13□□□□□ -1.91
SHMT2-230ENST00000557427 KRTAP4-12Q9BQ66 201 aa3.08□□□□□ -1.92
SHMT2-230ENST00000557427 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
SHMT2-230ENST00000557427 LCE1CQ5T751 118 aa2.97□□□□□ -1.93
SHMT2-230ENST00000557427 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
SHMT2-230ENST00000557427 PHGR1C9JFL3 82 aa2.89□□□□□ -1.95
SHMT2-230ENST00000557427 PRM1P04553 51 aa2.85□□□□□ -1.95
SHMT2-230ENST00000557427 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
SHMT2-230ENST00000557427 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.62□□□□□ -1.99
SHMT2-230ENST00000557427 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
SHMT2-230ENST00000557427 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
SHMT2-230ENST00000557427 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
SHMT2-230ENST00000557427 KRTAP21-1Q3LI58 79 aa2.18□□□□□ -2.06
SHMT2-230ENST00000557427 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 8.2 ms