RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LCE1D	Q5T752	114 aa		4.77	□□□□□ -1.65
SHMT2-223	ENST00000556689	KRTAP19-3	Q7Z4W3	81 aa		4.77	□□□□□ -1.65
SHMT2-223	ENST00000556689	KRTAP19-7	Q3SYF9	63 aa		4.75	□□□□□ -1.65
SHMT2-223	ENST00000556689	MT1E	P04732	61 aa		4.72	□□□□□ -1.65
SHMT2-223	ENST00000556689	HMCN1	Q96RW7	5635 aa		4.69	□□□□□ -1.66
SHMT2-223	ENST00000556689	MT4	P47944	62 aa		4.68	□□□□□ -1.66
SHMT2-223	ENST00000556689	LCE4A	Q5TA78	99 aa		4.68	□□□□□ -1.66
SHMT2-223	ENST00000556689	AHNAK2	Q8IVF2	5795 aa		4.63	□□□□□ -1.67
SHMT2-223	ENST00000556689	MT1G	P13640	62 aa		4.63	□□□□□ -1.67
SHMT2-223	ENST00000556689	KRTAP5-10	Q6L8G5	202 aa		4.6	□□□□□ -1.67
SHMT2-223	ENST00000556689	PP632	Q6XCG6	107 aa		4.6	□□□□□ -1.67
SHMT2-223	ENST00000556689	PRO0628	Q9UI54	55 aa		4.6	□□□□□ -1.67
SHMT2-223	ENST00000556689	TNP1	P09430	55 aa		4.57	□□□□□ -1.68
SHMT2-223	ENST00000556689	ROMO1	P60602	79 aa		4.55	□□□□□ -1.68
SHMT2-223	ENST00000556689	KRTAP19-5	Q3LI72	72 aa		4.54	□□□□□ -1.68
SHMT2-223	ENST00000556689	PMAIP1	Q13794	54 aa		4.52	□□□□□ -1.69
SHMT2-223	ENST00000556689	KRTAP25-1	Q3LHN0	102 aa		4.52	□□□□□ -1.69
SHMT2-223	ENST00000556689	KRTAP5-4	Q6L8H1	288 aa		4.52	□□□□□ -1.69
SHMT2-223	ENST00000556689	MT1M	Q8N339	61 aa		4.52	□□□□□ -1.69
SHMT2-223	ENST00000556689	C10orf95	Q9H7T3	257 aa		4.51	□□□□□ -1.69
SHMT2-223	ENST00000556689	KRTAP4-6	Q9BYQ5	205 aa		4.5	□□□□□ -1.69
SHMT2-223	ENST00000556689	KRTAP5-7	Q6L8G8	165 aa		4.47	□□□□□ -1.69
SHMT2-223	ENST00000556689	MT1L	Q93083	61 aa		4.45	□□□□□ -1.7
SHMT2-223	ENST00000556689	KRTAP4-3	Q9BYR4	195 aa		4.43	□□□□□ -1.7
SHMT2-223	ENST00000556689	KRTAP5-3	Q6L8H2	238 aa		4.42	□□□□□ -1.7
SHMT2-223	ENST00000556689	KRTAP23-1	A1A580	65 aa		4.34	□□□□□ -1.71
SHMT2-223	ENST00000556689	SPRR5	A0A1B0GTR4	108 aa		4.3	□□□□□ -1.72
SHMT2-223	ENST00000556689	LCE3A	Q5TA76	89 aa		4.3	□□□□□ -1.72
SHMT2-223	ENST00000556689	KRTAP20-2	Q3LI61	65 aa		4.29	□□□□□ -1.72
SHMT2-223	ENST00000556689	KTN1-AS1	Q86SY8	53 aa		4.29	□□□□□ -1.72
SHMT2-223	ENST00000556689	SVIP	Q8NHG7	77 aa		4.24	□□□□□ -1.73
SHMT2-223	ENST00000556689	KRTAP4-7	Q9BYR0	210 aa		4.23	□□□□□ -1.73
SHMT2-223	ENST00000556689	KRTAP12-4	P60329	112 aa		4.2	□□□□□ -1.74
SHMT2-223	ENST00000556689	KRTAP12-3	P60328	96 aa		4.18	□□□□□ -1.74
SHMT2-223	ENST00000556689	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.17	□□□□□ -1.74
SHMT2-223	ENST00000556689	PRAC1	Q96KF2	57 aa		4.16	□□□□□ -1.74
SHMT2-223	ENST00000556689	SYNE1	Q8NF91	8797 aa	Known RBP	4.05	□□□□□ -1.76
SHMT2-223	ENST00000556689	KRTAP15-1	Q3LI76	137 aa		4.04	□□□□□ -1.76
SHMT2-223	ENST00000556689	LOC100996750	A0A140TA64	210 aa		4.03	□□□□□ -1.76
SHMT2-223	ENST00000556689	KRTAP19-4	Q3LI73	84 aa		4.02	□□□□□ -1.77
SHMT2-223	ENST00000556689	KRTAP4-11	Q9BYQ6	195 aa		4.01	□□□□□ -1.77
SHMT2-223	ENST00000556689	KRTAP5-2	Q701N4	177 aa		3.89	□□□□□ -1.79
SHMT2-223	ENST00000556689	AHNAK	Q09666	5890 aa	Known RBP	3.88	□□□□□ -1.79
SHMT2-223	ENST00000556689	KRTAP5-8	O75690	187 aa		3.87	□□□□□ -1.79
SHMT2-223	ENST00000556689	LCE3C	Q5T5A8	94 aa		3.87	□□□□□ -1.79
SHMT2-223	ENST00000556689	MUC5AC	P98088	5654 aa		3.86	□□□□□ -1.79
SHMT2-223	ENST00000556689	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.86	□□□□□ -1.79
SHMT2-223	ENST00000556689	KRTAP6-1	Q3LI64	71 aa		3.79	□□□□□ -1.8
SHMT2-223	ENST00000556689	OBSCN	Q5VST9	7968 aa		3.79	□□□□□ -1.8
SHMT2-223	ENST00000556689	MT1A	P04731	61 aa		3.78	□□□□□ -1.8
SHMT2-223	ENST00000556689	KRTAP9-9	Q9BYP9	154 aa		3.76	□□□□□ -1.81
SHMT2-223	ENST00000556689	KRTAP9-4	Q9BYQ2	154 aa		3.72	□□□□□ -1.81
SHMT2-223	ENST00000556689	KRTAP6-2	Q3LI66	62 aa		3.69	□□□□□ -1.82
SHMT2-223	ENST00000556689	LUZP6	Q538Z0	58 aa		3.63	□□□□□ -1.83
SHMT2-223	ENST00000556689	KRTAP5-1	Q6L8H4	278 aa		3.56	□□□□□ -1.84
SHMT2-223	ENST00000556689	KRTAP9-6	A8MVA2	160 aa		3.53	□□□□□ -1.84
SHMT2-223	ENST00000556689	MT3	P25713	68 aa		3.51	□□□□□ -1.85
SHMT2-223	ENST00000556689	LCE1E	Q5T753	118 aa		3.3	□□□□□ -1.88
SHMT2-223	ENST00000556689	NDUFAF8	A1L188	74 aa		3.26	□□□□□ -1.89
SHMT2-223	ENST00000556689	LCE1B	Q5T7P3	118 aa		3.14	□□□□□ -1.91
SHMT2-223	ENST00000556689	KRTAP4-2	Q9BYR5	136 aa		3.12	□□□□□ -1.91
SHMT2-223	ENST00000556689	KRTAP4-12	Q9BQ66	201 aa		3.07	□□□□□ -1.92
SHMT2-223	ENST00000556689	LCE1C	Q5T751	118 aa		3.06	□□□□□ -1.92
SHMT2-223	ENST00000556689		A0A0A0MQY5	61 aa		2.95	□□□□□ -1.94
SHMT2-223	ENST00000556689	LCE3D	Q9BYE3	92 aa		2.9	□□□□□ -1.95
SHMT2-223	ENST00000556689		H3BS24	57 aa		2.84	□□□□□ -1.95
SHMT2-223	ENST00000556689	LCE1F	Q5T754	118 aa		2.82	□□□□□ -1.96
SHMT2-223	ENST00000556689	KRTAP5-11	Q6L8G4	156 aa		2.81	□□□□□ -1.96
SHMT2-223	ENST00000556689	LCE3E	Q5T5B0	92 aa		2.8	□□□□□ -1.96
SHMT2-223	ENST00000556689	INE1	O15225	51 aa		2.78	□□□□□ -1.96
SHMT2-223	ENST00000556689	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.72	□□□□□ -1.97
SHMT2-223	ENST00000556689	PHGR1	C9JFL3	82 aa		2.7	□□□□□ -1.98
SHMT2-223	ENST00000556689	KRTAP21-2	Q3LI59	83 aa		2.5	□□□□□ -2.01
SHMT2-223	ENST00000556689	KRTAP4-4	Q9BYR3	166 aa		2.35	□□□□□ -2.03
SHMT2-223	ENST00000556689	PRM1	P04553	51 aa		2.33	□□□□□ -2.04
SHMT2-223	ENST00000556689	MUC19	Q7Z5P9	8384 aa		2.32	□□□□□ -2.04
SHMT2-223	ENST00000556689	KRTAP21-1	Q3LI58	79 aa		2.07	□□□□□ -2.08
SHMT2-223	ENST00000556689	MUC16	Q8WXI7	14507 aa		1.64	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 96.5 ms