RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 SERP1Q9Y6X1 66 aa4.92□□□□□ -1.62
ACTN1-219ENST00000556432 ATP5EP56381 51 aaPredicted RBP4.91□□□□□ -1.62
ACTN1-219ENST00000556432 KRTAP4-3Q9BYR4 195 aa4.91□□□□□ -1.62
ACTN1-219ENST00000556432 SPATA8Q6RVD6 105 aa4.9□□□□□ -1.63
ACTN1-219ENST00000556432 MT1LQ93083 61 aa4.9□□□□□ -1.63
ACTN1-219ENST00000556432 PRO0628Q9UI54 55 aa4.89□□□□□ -1.63
ACTN1-219ENST00000556432 TMEM258P61165 79 aa4.88□□□□□ -1.63
ACTN1-219ENST00000556432 A0A1B0GU33 70 aa4.86□□□□□ -1.63
ACTN1-219ENST00000556432 A0A1B0GU69 56 aa4.85□□□□□ -1.63
ACTN1-219ENST00000556432 KRTAP20-2Q3LI61 65 aa4.8□□□□□ -1.64
ACTN1-219ENST00000556432 A8MU10 97 aa4.77□□□□□ -1.65
ACTN1-219ENST00000556432 SPINT4Q6UDR6 99 aa4.76□□□□□ -1.65
ACTN1-219ENST00000556432 LINC01558Q9Y6Z2 57 aa4.76□□□□□ -1.65
ACTN1-219ENST00000556432 KRTAP12-1P59990 96 aa4.75□□□□□ -1.65
ACTN1-219ENST00000556432 RPS28P62857 69 aaKnown RBP4.75□□□□□ -1.65
ACTN1-219ENST00000556432 PRR15LQ9BU68 103 aa4.72□□□□□ -1.65
ACTN1-219ENST00000556432 SMIM26A0A096LP01 95 aa4.69□□□□□ -1.66
ACTN1-219ENST00000556432 C10orf95Q9H7T3 257 aa4.69□□□□□ -1.66
ACTN1-219ENST00000556432 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
ACTN1-219ENST00000556432 PMAIP1Q13794 54 aa4.66□□□□□ -1.66
ACTN1-219ENST00000556432 KRTAP4-7Q9BYR0 210 aa4.65□□□□□ -1.67
ACTN1-219ENST00000556432 LCE3AQ5TA76 89 aa4.64□□□□□ -1.67
ACTN1-219ENST00000556432 UQCR11O14957 56 aa4.58□□□□□ -1.68
ACTN1-219ENST00000556432 PSPHP1O15172 72 aa4.58□□□□□ -1.68
ACTN1-219ENST00000556432 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
ACTN1-219ENST00000556432 Q1T7F1 81 aa4.54□□□□□ -1.68
ACTN1-219ENST00000556432 MIR22HGQ0VDD5 57 aa4.52□□□□□ -1.69
ACTN1-219ENST00000556432 KRTAP4-11Q9BYQ6 195 aa4.51□□□□□ -1.69
ACTN1-219ENST00000556432 AHNAKQ09666 5890 aaKnown RBP4.5□□□□□ -1.69
ACTN1-219ENST00000556432 TNP1P09430 55 aa4.5□□□□□ -1.69
ACTN1-219ENST00000556432 MUC5ACP98088 5654 aa4.46□□□□□ -1.7
ACTN1-219ENST00000556432 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
ACTN1-219ENST00000556432 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
ACTN1-219ENST00000556432 LOC100996750A0A140TA64 210 aa4.43□□□□□ -1.7
ACTN1-219ENST00000556432 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
ACTN1-219ENST00000556432 A6NED7 52 aa4.4□□□□□ -1.71
ACTN1-219ENST00000556432 MUC5BQ9HC84 5762 aaPredicted RBP4.39□□□□□ -1.71
ACTN1-219ENST00000556432 KRTAP5-8O75690 187 aa4.37□□□□□ -1.71
ACTN1-219ENST00000556432 KTN1-AS1Q86SY8 53 aa4.37□□□□□ -1.71
ACTN1-219ENST00000556432 K7ERS5 55 aa4.34□□□□□ -1.71
ACTN1-219ENST00000556432 KRTAP5-2Q701N4 177 aa4.3□□□□□ -1.72
ACTN1-219ENST00000556432 BRK1Q8WUW1 75 aa4.3□□□□□ -1.72
ACTN1-219ENST00000556432 KRTAP25-1Q3LHN0 102 aa4.26□□□□□ -1.73
ACTN1-219ENST00000556432 KRTAP9-9Q9BYP9 154 aa4.26□□□□□ -1.73
ACTN1-219ENST00000556432 CDC42SE1Q9NRR8 79 aa4.21□□□□□ -1.74
ACTN1-219ENST00000556432 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
ACTN1-219ENST00000556432 MT1AP04731 61 aa4.15□□□□□ -1.75
ACTN1-219ENST00000556432 PRAC1Q96KF2 57 aa4.14□□□□□ -1.75
ACTN1-219ENST00000556432 ROMO1P60602 79 aa4.13□□□□□ -1.75
ACTN1-219ENST00000556432 OBSCNQ5VST9 7968 aa4.12□□□□□ -1.75
ACTN1-219ENST00000556432 KRTAP6-2Q3LI66 62 aa4.1□□□□□ -1.75
ACTN1-219ENST00000556432 KRTAP19-4Q3LI73 84 aa4.09□□□□□ -1.75
ACTN1-219ENST00000556432 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
ACTN1-219ENST00000556432 LCE3CQ5T5A8 94 aa4.03□□□□□ -1.76
ACTN1-219ENST00000556432 KRTAP15-1Q3LI76 137 aa3.99□□□□□ -1.77
ACTN1-219ENST00000556432 LUZP6Q538Z0 58 aa3.97□□□□□ -1.77
ACTN1-219ENST00000556432 KRTAP5-1Q6L8H4 278 aa3.95□□□□□ -1.78
ACTN1-219ENST00000556432 MT3P25713 68 aa3.83□□□□□ -1.8
ACTN1-219ENST00000556432 KRTAP9-6A8MVA2 160 aa3.8□□□□□ -1.8
ACTN1-219ENST00000556432 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
ACTN1-219ENST00000556432 NDUFAF8A1L188 74 aa3.57□□□□□ -1.84
ACTN1-219ENST00000556432 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
ACTN1-219ENST00000556432 KRTAP4-2Q9BYR5 136 aa3.45□□□□□ -1.86
ACTN1-219ENST00000556432 KRTAP4-12Q9BQ66 201 aa3.38□□□□□ -1.87
ACTN1-219ENST00000556432 LCE1CQ5T751 118 aa3.34□□□□□ -1.87
ACTN1-219ENST00000556432 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
ACTN1-219ENST00000556432 INE1O15225 51 aa3.13□□□□□ -1.91
ACTN1-219ENST00000556432 PHGR1C9JFL3 82 aa3.12□□□□□ -1.91
ACTN1-219ENST00000556432 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
ACTN1-219ENST00000556432 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.95□□□□□ -1.94
ACTN1-219ENST00000556432 LCE3DQ9BYE3 92 aa2.82□□□□□ -1.96
ACTN1-219ENST00000556432 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
ACTN1-219ENST00000556432 LCE3EQ5T5B0 92 aa2.68□□□□□ -1.98
ACTN1-219ENST00000556432 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
ACTN1-219ENST00000556432 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
ACTN1-219ENST00000556432 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
ACTN1-219ENST00000556432 PRM1P04553 51 aa2.17□□□□□ -2.06
ACTN1-219ENST00000556432 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 74.2 ms