RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 LCE5AQ5TCM9 118 aa5.04□□□□□ -1.6
SHMT2-219ENST00000555563 KRTAP19-3Q7Z4W3 81 aa5.04□□□□□ -1.6
SHMT2-219ENST00000555563 DSTQ03001 7570 aaKnown RBP5.03□□□□□ -1.6
SHMT2-219ENST00000555563 TNP1P09430 55 aa5.02□□□□□ -1.61
SHMT2-219ENST00000555563 LCE3AQ5TA76 89 aa4.99□□□□□ -1.61
SHMT2-219ENST00000555563 MIR22HGQ0VDD5 57 aa4.97□□□□□ -1.61
SHMT2-219ENST00000555563 PSPHP1O15172 72 aa4.94□□□□□ -1.62
SHMT2-219ENST00000555563 KRTAP4-9Q9BYQ8 210 aa4.93□□□□□ -1.62
SHMT2-219ENST00000555563 Q1T7F1 81 aa4.92□□□□□ -1.62
SHMT2-219ENST00000555563 MT1GP13640 62 aa4.91□□□□□ -1.62
SHMT2-219ENST00000555563 MT1LQ93083 61 aa4.91□□□□□ -1.62
SHMT2-219ENST00000555563 PP632Q6XCG6 107 aa4.88□□□□□ -1.63
SHMT2-219ENST00000555563 MT1MQ8N339 61 aa4.86□□□□□ -1.63
SHMT2-219ENST00000555563 K7ERS5 55 aa4.84□□□□□ -1.63
SHMT2-219ENST00000555563 KRTAP12-3P60328 96 aa4.79□□□□□ -1.64
SHMT2-219ENST00000555563 KRTAP25-1Q3LHN0 102 aa4.79□□□□□ -1.64
SHMT2-219ENST00000555563 KRTAP9-4Q9BYQ2 154 aa4.79□□□□□ -1.64
SHMT2-219ENST00000555563 A6NED7 52 aa4.77□□□□□ -1.65
SHMT2-219ENST00000555563 LCE1DQ5T752 114 aa4.77□□□□□ -1.65
SHMT2-219ENST00000555563 KRTAP4-3Q9BYR4 195 aa4.75□□□□□ -1.65
SHMT2-219ENST00000555563 RPS28P62857 69 aaKnown RBP4.72□□□□□ -1.65
SHMT2-219ENST00000555563 KRTAP9-9Q9BYP9 154 aa4.71□□□□□ -1.66
SHMT2-219ENST00000555563 HMCN1Q96RW7 5635 aa4.69□□□□□ -1.66
SHMT2-219ENST00000555563 MT4P47944 62 aa4.68□□□□□ -1.66
SHMT2-219ENST00000555563 LCE4AQ5TA78 99 aa4.68□□□□□ -1.66
SHMT2-219ENST00000555563 KRTAP4-7Q9BYR0 210 aa4.67□□□□□ -1.66
SHMT2-219ENST00000555563 AHNAK2Q8IVF2 5795 aa4.63□□□□□ -1.67
SHMT2-219ENST00000555563 CDC42SE1Q9NRR8 79 aa4.61□□□□□ -1.67
SHMT2-219ENST00000555563 KRTAP5-10Q6L8G5 202 aa4.6□□□□□ -1.67
SHMT2-219ENST00000555563 NDUFAF8A1L188 74 aa4.59□□□□□ -1.67
SHMT2-219ENST00000555563 KRTAP5-4Q6L8H1 288 aa4.57□□□□□ -1.68
SHMT2-219ENST00000555563 ROMO1P60602 79 aa4.54□□□□□ -1.68
SHMT2-219ENST00000555563 KRTAP4-12Q9BQ66 201 aa4.54□□□□□ -1.68
SHMT2-219ENST00000555563 PRO0628Q9UI54 55 aa4.53□□□□□ -1.68
SHMT2-219ENST00000555563 KRTAP4-6Q9BYQ5 205 aa4.5□□□□□ -1.69
SHMT2-219ENST00000555563 KRTAP5-7Q6L8G8 165 aa4.47□□□□□ -1.69
SHMT2-219ENST00000555563 KRTAP5-5Q701N2 237 aaPredicted RBP4.45□□□□□ -1.7
SHMT2-219ENST00000555563 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
SHMT2-219ENST00000555563 LCE3CQ5T5A8 94 aa4.42□□□□□ -1.7
SHMT2-219ENST00000555563 KRTAP5-3Q6L8H2 238 aa4.42□□□□□ -1.7
SHMT2-219ENST00000555563 KRTAP20-2Q3LI61 65 aa4.31□□□□□ -1.72
SHMT2-219ENST00000555563 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
SHMT2-219ENST00000555563 KRTAP12-4P60329 112 aa4.28□□□□□ -1.72
SHMT2-219ENST00000555563 PMAIP1Q13794 54 aa4.24□□□□□ -1.73
SHMT2-219ENST00000555563 SYNE1Q8NF91 8797 aaKnown RBP4.24□□□□□ -1.73
SHMT2-219ENST00000555563 LUZP6Q538Z0 58 aa4.22□□□□□ -1.73
SHMT2-219ENST00000555563 KRTAP9-6A8MVA2 160 aa4.19□□□□□ -1.74
SHMT2-219ENST00000555563 BRK1Q8WUW1 75 aa4.19□□□□□ -1.74
SHMT2-219ENST00000555563 MT1AP04731 61 aa4.17□□□□□ -1.74
SHMT2-219ENST00000555563 KRTAP6-1Q3LI64 71 aa4.14□□□□□ -1.75
SHMT2-219ENST00000555563 MT3P25713 68 aa4.08□□□□□ -1.76
SHMT2-219ENST00000555563 KRTAP5-2Q701N4 177 aa4.03□□□□□ -1.76
SHMT2-219ENST00000555563 KRTAP4-11Q9BYQ6 195 aa4.01□□□□□ -1.77
SHMT2-219ENST00000555563 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
SHMT2-219ENST00000555563 AHNAKQ09666 5890 aaKnown RBP3.88□□□□□ -1.79
SHMT2-219ENST00000555563 KRTAP5-8O75690 187 aa3.87□□□□□ -1.79
SHMT2-219ENST00000555563 MUC5ACP98088 5654 aa3.86□□□□□ -1.79
SHMT2-219ENST00000555563 MUC5BQ9HC84 5762 aaPredicted RBP3.86□□□□□ -1.79
SHMT2-219ENST00000555563 LCE1FQ5T754 118 aa3.85□□□□□ -1.79
SHMT2-219ENST00000555563 KTN1-AS1Q86SY8 53 aa3.83□□□□□ -1.8
SHMT2-219ENST00000555563 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
SHMT2-219ENST00000555563 KRTAP5-1Q6L8H4 278 aa3.59□□□□□ -1.83
SHMT2-219ENST00000555563 KRTAP4-2Q9BYR5 136 aa3.49□□□□□ -1.85
SHMT2-219ENST00000555563 LCE1EQ5T753 118 aa3.45□□□□□ -1.86
SHMT2-219ENST00000555563 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
SHMT2-219ENST00000555563 LCE3EQ5T5B0 92 aa3.21□□□□□ -1.9
SHMT2-219ENST00000555563 LCE1CQ5T751 118 aa3.21□□□□□ -1.9
SHMT2-219ENST00000555563 LCE3DQ9BYE3 92 aa3.19□□□□□ -1.9
SHMT2-219ENST00000555563 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.94□□□□□ -1.94
SHMT2-219ENST00000555563 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
SHMT2-219ENST00000555563 INE1O15225 51 aa2.88□□□□□ -1.95
SHMT2-219ENST00000555563 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
SHMT2-219ENST00000555563 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
SHMT2-219ENST00000555563 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
SHMT2-219ENST00000555563 PRM1P04553 51 aa2.34□□□□□ -2.03
SHMT2-219ENST00000555563 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
SHMT2-219ENST00000555563 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
SHMT2-219ENST00000555563 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 8.1 ms