RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 SPRR2AP35326 72 aa5.48□□□□□ -1.53
SHMT2-217ENST00000555116 LCE1AQ5T7P2 110 aa5.46□□□□□ -1.54
SHMT2-217ENST00000555116 MDN1Q9NU22 5596 aa5.46□□□□□ -1.54
SHMT2-217ENST00000555116 TNP1P09430 55 aa5.45□□□□□ -1.54
SHMT2-217ENST00000555116 KRTAP20-1Q3LI63 56 aa5.39□□□□□ -1.55
SHMT2-217ENST00000555116 KRTAP19-4Q3LI73 84 aa5.38□□□□□ -1.55
SHMT2-217ENST00000555116 KRTAP19-7Q3SYF9 63 aa5.34□□□□□ -1.55
SHMT2-217ENST00000555116 LUZP6Q538Z0 58 aa5.32□□□□□ -1.56
SHMT2-217ENST00000555116 KRTAP2-3P0C7H8 128 aa5.31□□□□□ -1.56
SHMT2-217ENST00000555116 KRTAP2-4Q9BYR9 128 aa5.31□□□□□ -1.56
SHMT2-217ENST00000555116 SPRR2DP22532 72 aa5.29□□□□□ -1.56
SHMT2-217ENST00000555116 MT1EP04732 61 aa5.28□□□□□ -1.56
SHMT2-217ENST00000555116 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
SHMT2-217ENST00000555116 LCE3AQ5TA76 89 aa5.22□□□□□ -1.57
SHMT2-217ENST00000555116 LCE5AQ5TCM9 118 aa5.18□□□□□ -1.58
SHMT2-217ENST00000555116 KRTAP19-3Q7Z4W3 81 aa5.18□□□□□ -1.58
SHMT2-217ENST00000555116 KRTAP2-2Q9BYT5 123 aa5.15□□□□□ -1.58
SHMT2-217ENST00000555116 KRTAP2-1Q9BYU5 128 aa5.15□□□□□ -1.58
SHMT2-217ENST00000555116 LCE3BQ5TA77 95 aa5.14□□□□□ -1.59
SHMT2-217ENST00000555116 MT1GP13640 62 aa5.09□□□□□ -1.6
SHMT2-217ENST00000555116 MT1LQ93083 61 aa5.08□□□□□ -1.6
SHMT2-217ENST00000555116 SPRR5A0A1B0GTR4 108 aa5.06□□□□□ -1.6
SHMT2-217ENST00000555116 KRTAP12-3P60328 96 aa5.02□□□□□ -1.61
SHMT2-217ENST00000555116 MT1MQ8N339 61 aa5.01□□□□□ -1.61
SHMT2-217ENST00000555116 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.62
SHMT2-217ENST00000555116 KRTAP4-3Q9BYR4 195 aa4.9□□□□□ -1.63
SHMT2-217ENST00000555116 DSTQ03001 7570 aaKnown RBP4.88□□□□□ -1.63
SHMT2-217ENST00000555116 LCE4AQ5TA78 99 aa4.88□□□□□ -1.63
SHMT2-217ENST00000555116 KRTAP4-7Q9BYR0 210 aa4.85□□□□□ -1.63
SHMT2-217ENST00000555116 KRTAP9-9Q9BYP9 154 aa4.82□□□□□ -1.64
SHMT2-217ENST00000555116 KRTAP4-9Q9BYQ8 210 aa4.73□□□□□ -1.65
SHMT2-217ENST00000555116 LCE3CQ5T5A8 94 aa4.68□□□□□ -1.66
SHMT2-217ENST00000555116 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
SHMT2-217ENST00000555116 KRTAP4-12Q9BQ66 201 aa4.66□□□□□ -1.66
SHMT2-217ENST00000555116 INE1O15225 51 aa4.66□□□□□ -1.66
SHMT2-217ENST00000555116 LCE1DQ5T752 114 aa4.65□□□□□ -1.66
SHMT2-217ENST00000555116 MT4P47944 62 aa4.61□□□□□ -1.67
SHMT2-217ENST00000555116 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.67
SHMT2-217ENST00000555116 KRTAP4-6Q9BYQ5 205 aa4.59□□□□□ -1.67
SHMT2-217ENST00000555116 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
SHMT2-217ENST00000555116 HMCN1Q96RW7 5635 aa4.51□□□□□ -1.69
SHMT2-217ENST00000555116 KRTAP9-6A8MVA2 160 aa4.46□□□□□ -1.7
SHMT2-217ENST00000555116 KRTAP20-2Q3LI61 65 aa4.39□□□□□ -1.71
SHMT2-217ENST00000555116 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
SHMT2-217ENST00000555116 SYNE1Q8NF91 8797 aaKnown RBP4.34□□□□□ -1.71
SHMT2-217ENST00000555116 GPR98Q8WXG9 6306 aa4.34□□□□□ -1.71
SHMT2-217ENST00000555116 MT1AP04731 61 aa4.32□□□□□ -1.72
SHMT2-217ENST00000555116 AHNAK2Q8IVF2 5795 aa4.3□□□□□ -1.72
SHMT2-217ENST00000555116 KRTAP6-1Q3LI64 71 aa4.29□□□□□ -1.72
SHMT2-217ENST00000555116 KRTAP5-3Q6L8H2 238 aa4.26□□□□□ -1.73
SHMT2-217ENST00000555116 KRTAP5-10Q6L8G5 202 aa4.23□□□□□ -1.73
SHMT2-217ENST00000555116 KRTAP5-2Q701N4 177 aa4.14□□□□□ -1.75
SHMT2-217ENST00000555116 KRTAP6-2Q3LI66 62 aa4.05□□□□□ -1.76
SHMT2-217ENST00000555116 MT3P25713 68 aa4.03□□□□□ -1.76
SHMT2-217ENST00000555116 KRTAP5-7Q6L8G8 165 aa4.03□□□□□ -1.76
SHMT2-217ENST00000555116 KRTAP4-11Q9BYQ6 195 aa3.95□□□□□ -1.78
SHMT2-217ENST00000555116 LCE1FQ5T754 118 aa3.93□□□□□ -1.78
SHMT2-217ENST00000555116 KRTAP5-8O75690 187 aa3.82□□□□□ -1.8
SHMT2-217ENST00000555116 OBSCNQ5VST9 7968 aa3.68□□□□□ -1.82
SHMT2-217ENST00000555116 KRTAP5-1Q6L8H4 278 aa3.67□□□□□ -1.82
SHMT2-217ENST00000555116 KRTAP4-2Q9BYR5 136 aa3.63□□□□□ -1.83
SHMT2-217ENST00000555116 LCE1EQ5T753 118 aa3.57□□□□□ -1.84
SHMT2-217ENST00000555116 LCE3DQ9BYE3 92 aa3.55□□□□□ -1.84
SHMT2-217ENST00000555116 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
SHMT2-217ENST00000555116 MUC5BQ9HC84 5762 aaPredicted RBP3.48□□□□□ -1.85
SHMT2-217ENST00000555116 LCE3EQ5T5B0 92 aa3.47□□□□□ -1.85
SHMT2-217ENST00000555116 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
SHMT2-217ENST00000555116 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
SHMT2-217ENST00000555116 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
SHMT2-217ENST00000555116 PRM1P04553 51 aa3.25□□□□□ -1.89
SHMT2-217ENST00000555116 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.05□□□□□ -1.92
SHMT2-217ENST00000555116 KRTAP5-11Q6L8G4 156 aa2.99□□□□□ -1.93
SHMT2-217ENST00000555116 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
SHMT2-217ENST00000555116 PHGR1C9JFL3 82 aa2.57□□□□□ -2
SHMT2-217ENST00000555116 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
SHMT2-217ENST00000555116 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
SHMT2-217ENST00000555116 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.08
SHMT2-217ENST00000555116 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 187 ms