RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
SHMT2-209ENST00000553949 PP632Q6XCG6 107 aa4.4□□□□□ -1.71
SHMT2-209ENST00000553949 PMAIP1Q13794 54 aa4.39□□□□□ -1.71
SHMT2-209ENST00000553949 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
SHMT2-209ENST00000553949 SPRR2DP22532 72 aa4.38□□□□□ -1.71
SHMT2-209ENST00000553949 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
SHMT2-209ENST00000553949 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
SHMT2-209ENST00000553949 MT1LQ93083 61 aa4.37□□□□□ -1.71
SHMT2-209ENST00000553949 PRO0628Q9UI54 55 aa4.36□□□□□ -1.71
SHMT2-209ENST00000553949 MT1GP13640 62 aa4.35□□□□□ -1.71
SHMT2-209ENST00000553949 MT1MQ8N339 61 aa4.28□□□□□ -1.72
SHMT2-209ENST00000553949 KRTAP15-1Q3LI76 137 aa4.26□□□□□ -1.73
SHMT2-209ENST00000553949 LCE3BQ5TA77 95 aa4.23□□□□□ -1.73
SHMT2-209ENST00000553949 KRTAP2-2Q9BYT5 123 aa4.22□□□□□ -1.73
SHMT2-209ENST00000553949 KRTAP2-1Q9BYU5 128 aa4.22□□□□□ -1.73
SHMT2-209ENST00000553949 KRTAP19-4Q3LI73 84 aa4.19□□□□□ -1.74
SHMT2-209ENST00000553949 KRTAP4-7Q9BYR0 210 aa4.19□□□□□ -1.74
SHMT2-209ENST00000553949 KRTAP4-3Q9BYR4 195 aa4.17□□□□□ -1.74
SHMT2-209ENST00000553949 PRAC1Q96KF2 57 aa4.16□□□□□ -1.74
SHMT2-209ENST00000553949 DSTQ03001 7570 aaKnown RBP4.14□□□□□ -1.75
SHMT2-209ENST00000553949 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
SHMT2-209ENST00000553949 KTN1-AS1Q86SY8 53 aa4.09□□□□□ -1.75
SHMT2-209ENST00000553949 GPR98Q8WXG9 6306 aa4.06□□□□□ -1.76
SHMT2-209ENST00000553949 LOC100996750A0A140TA64 210 aa3.95□□□□□ -1.78
SHMT2-209ENST00000553949 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
SHMT2-209ENST00000553949 KRTAP9-6A8MVA2 160 aa3.88□□□□□ -1.79
SHMT2-209ENST00000553949 LCE4AQ5TA78 99 aa3.88□□□□□ -1.79
SHMT2-209ENST00000553949 KRTAP5-4Q6L8H1 288 aa3.88□□□□□ -1.79
SHMT2-209ENST00000553949 SVIPQ8NHG7 77 aa3.88□□□□□ -1.79
SHMT2-209ENST00000553949 KRTAP4-9Q9BYQ8 210 aa3.86□□□□□ -1.79
SHMT2-209ENST00000553949 MT4P47944 62 aa3.81□□□□□ -1.8
SHMT2-209ENST00000553949 LCE1DQ5T752 114 aa3.8□□□□□ -1.8
SHMT2-209ENST00000553949 HMCN1Q96RW7 5635 aa3.77□□□□□ -1.81
SHMT2-209ENST00000553949 SPRR5A0A1B0GTR4 108 aa3.75□□□□□ -1.81
SHMT2-209ENST00000553949 KRTAP4-6Q9BYQ5 205 aa3.74□□□□□ -1.81
SHMT2-209ENST00000553949 MT1AP04731 61 aa3.73□□□□□ -1.81
SHMT2-209ENST00000553949 SYNE1Q8NF91 8797 aaKnown RBP3.72□□□□□ -1.81
SHMT2-209ENST00000553949 KRTAP12-4P60329 112 aa3.7□□□□□ -1.82
SHMT2-209ENST00000553949 KRTAP6-1Q3LI64 71 aa3.69□□□□□ -1.82
SHMT2-209ENST00000553949 AHNAK2Q8IVF2 5795 aa3.68□□□□□ -1.82
SHMT2-209ENST00000553949 KRTAP20-2Q3LI61 65 aa3.64□□□□□ -1.83
SHMT2-209ENST00000553949 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
SHMT2-209ENST00000553949 KRTAP9-4Q9BYQ2 154 aa3.57□□□□□ -1.84
SHMT2-209ENST00000553949 KRTAP5-3Q6L8H2 238 aa3.52□□□□□ -1.85
SHMT2-209ENST00000553949 KRTAP5-7Q6L8G8 165 aa3.5□□□□□ -1.85
SHMT2-209ENST00000553949 KRTAP5-2Q701N4 177 aa3.47□□□□□ -1.85
SHMT2-209ENST00000553949 KRTAP6-2Q3LI66 62 aa3.46□□□□□ -1.86
SHMT2-209ENST00000553949 LUZP6Q538Z0 58 aa3.45□□□□□ -1.86
SHMT2-209ENST00000553949 MT3P25713 68 aa3.39□□□□□ -1.87
SHMT2-209ENST00000553949 KRTAP4-11Q9BYQ6 195 aa3.24□□□□□ -1.89
SHMT2-209ENST00000553949 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.9
SHMT2-209ENST00000553949 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
SHMT2-209ENST00000553949 KRTAP5-8O75690 187 aa3.13□□□□□ -1.91
SHMT2-209ENST00000553949 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
SHMT2-209ENST00000553949 NDUFAF8A1L188 74 aa3.1□□□□□ -1.91
SHMT2-209ENST00000553949 MUC5BQ9HC84 5762 aaPredicted RBP3.08□□□□□ -1.92
SHMT2-209ENST00000553949 KRTAP5-1Q6L8H4 278 aa3.04□□□□□ -1.92
SHMT2-209ENST00000553949 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
SHMT2-209ENST00000553949 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
SHMT2-209ENST00000553949 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
SHMT2-209ENST00000553949 KRTAP9-9Q9BYP9 154 aa2.9□□□□□ -1.95
SHMT2-209ENST00000553949 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
SHMT2-209ENST00000553949 KRTAP4-2Q9BYR5 136 aa2.83□□□□□ -1.96
SHMT2-209ENST00000553949 LCE1CQ5T751 118 aa2.81□□□□□ -1.96
SHMT2-209ENST00000553949 A0A0A0MQY5 61 aa2.62□□□□□ -1.99
SHMT2-209ENST00000553949 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
SHMT2-209ENST00000553949 INE1O15225 51 aa2.55□□□□□ -2
SHMT2-209ENST00000553949 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
SHMT2-209ENST00000553949 KRTAP4-12Q9BQ66 201 aa2.45□□□□□ -2.02
SHMT2-209ENST00000553949 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
SHMT2-209ENST00000553949 PRM1P04553 51 aa2.38□□□□□ -2.03
SHMT2-209ENST00000553949 LCE1FQ5T754 118 aa2.37□□□□□ -2.03
SHMT2-209ENST00000553949 H3BS24 57 aa2.23□□□□□ -2.05
SHMT2-209ENST00000553949 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
SHMT2-209ENST00000553949 KRTAP4-4Q9BYR3 166 aa2.17□□□□□ -2.06
SHMT2-209ENST00000553949 MUC19Q7Z5P9 8384 aa1.92□□□□□ -2.1
SHMT2-209ENST00000553949 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
SHMT2-209ENST00000553949 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 9.9 ms