RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 KRTAP25-1Q3LHN0 102 aa5.85□□□□□ -1.47
SHMT2-208ENST00000553868 KTN1-AS1Q86SY8 53 aa5.78□□□□□ -1.48
SHMT2-208ENST00000553868 KRTAP10-7P60409 375 aaPredicted RBP5.69□□□□□ -1.5
SHMT2-208ENST00000553868 KRTAP4-8A0A0G2JLE6 195 aa5.68□□□□□ -1.5
SHMT2-208ENST00000553868 KRTAP4-8Q9BYQ9 185 aa5.68□□□□□ -1.5
SHMT2-208ENST00000553868 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
SHMT2-208ENST00000553868 KRTAP10-12P60413 245 aa5.67□□□□□ -1.5
SHMT2-208ENST00000553868 HMCN1Q96RW7 5635 aa5.66□□□□□ -1.5
SHMT2-208ENST00000553868 AHNAK2Q8IVF2 5795 aa5.65□□□□□ -1.5
SHMT2-208ENST00000553868 PP632Q6XCG6 107 aa5.65□□□□□ -1.5
SHMT2-208ENST00000553868 PRAC1Q96KF2 57 aa5.63□□□□□ -1.51
SHMT2-208ENST00000553868 SVIPQ8NHG7 77 aa5.6□□□□□ -1.51
SHMT2-208ENST00000553868 LCE1DQ5T752 114 aa5.57□□□□□ -1.52
SHMT2-208ENST00000553868 LCE3AQ5TA76 89 aa5.56□□□□□ -1.52
SHMT2-208ENST00000553868 KRTAP5-10Q6L8G5 202 aa5.56□□□□□ -1.52
SHMT2-208ENST00000553868 MT4P47944 62 aa5.43□□□□□ -1.54
SHMT2-208ENST00000553868 KRTAP5-7Q6L8G8 165 aa5.43□□□□□ -1.54
SHMT2-208ENST00000553868 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
SHMT2-208ENST00000553868 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
SHMT2-208ENST00000553868 KRTAP19-5Q3LI72 72 aa5.36□□□□□ -1.55
SHMT2-208ENST00000553868 KRTAP19-7Q3SYF9 63 aa5.3□□□□□ -1.56
SHMT2-208ENST00000553868 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
SHMT2-208ENST00000553868 LCE4AQ5TA78 99 aa5.25□□□□□ -1.57
SHMT2-208ENST00000553868 KRTAP5-3Q6L8H2 238 aa5.25□□□□□ -1.57
SHMT2-208ENST00000553868 MT1EP04732 61 aa5.24□□□□□ -1.57
SHMT2-208ENST00000553868 LCE5AQ5TCM9 118 aa5.23□□□□□ -1.57
SHMT2-208ENST00000553868 KRTAP4-6Q9BYQ5 205 aa5.19□□□□□ -1.58
SHMT2-208ENST00000553868 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
SHMT2-208ENST00000553868 MT1LQ93083 61 aa5.12□□□□□ -1.59
SHMT2-208ENST00000553868 KRTAP19-3Q7Z4W3 81 aa5.1□□□□□ -1.59
SHMT2-208ENST00000553868 MT1GP13640 62 aa5.05□□□□□ -1.6
SHMT2-208ENST00000553868 KRTAP5-4Q6L8H1 288 aa5.04□□□□□ -1.6
SHMT2-208ENST00000553868 LCE3CQ5T5A8 94 aa5□□□□□ -1.61
SHMT2-208ENST00000553868 MT1MQ8N339 61 aa4.95□□□□□ -1.62
SHMT2-208ENST00000553868 AHNAKQ09666 5890 aaKnown RBP4.9□□□□□ -1.62
SHMT2-208ENST00000553868 KRTAP4-7Q9BYR0 210 aa4.86□□□□□ -1.63
SHMT2-208ENST00000553868 KRTAP20-2Q3LI61 65 aa4.84□□□□□ -1.63
SHMT2-208ENST00000553868 KRTAP4-3Q9BYR4 195 aa4.84□□□□□ -1.63
SHMT2-208ENST00000553868 MUC5ACP98088 5654 aa4.8□□□□□ -1.64
SHMT2-208ENST00000553868 MUC5BQ9HC84 5762 aaPredicted RBP4.76□□□□□ -1.65
SHMT2-208ENST00000553868 LUZP6Q538Z0 58 aa4.75□□□□□ -1.65
SHMT2-208ENST00000553868 KRTAP9-6A8MVA2 160 aa4.64□□□□□ -1.67
SHMT2-208ENST00000553868 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
SHMT2-208ENST00000553868 LOC100996750A0A140TA64 210 aa4.58□□□□□ -1.68
SHMT2-208ENST00000553868 KRTAP5-8O75690 187 aa4.56□□□□□ -1.68
SHMT2-208ENST00000553868 SYNE1Q8NF91 8797 aaKnown RBP4.54□□□□□ -1.68
SHMT2-208ENST00000553868 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
SHMT2-208ENST00000553868 KRTAP5-5Q701N2 237 aaPredicted RBP4.48□□□□□ -1.69
SHMT2-208ENST00000553868 NDUFAF8A1L188 74 aa4.44□□□□□ -1.7
SHMT2-208ENST00000553868 MT1AP04731 61 aa4.38□□□□□ -1.71
SHMT2-208ENST00000553868 KRTAP9-9Q9BYP9 154 aa4.37□□□□□ -1.71
SHMT2-208ENST00000553868 OBSCNQ5VST9 7968 aa4.36□□□□□ -1.71
SHMT2-208ENST00000553868 H3BS24 57 aa4.35□□□□□ -1.71
SHMT2-208ENST00000553868 KRTAP6-1Q3LI64 71 aa4.29□□□□□ -1.72
SHMT2-208ENST00000553868 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
SHMT2-208ENST00000553868 KRTAP9-4Q9BYQ2 154 aa4.17□□□□□ -1.74
SHMT2-208ENST00000553868 KRTAP5-1Q6L8H4 278 aa4.01□□□□□ -1.77
SHMT2-208ENST00000553868 MT3P25713 68 aa4□□□□□ -1.77
SHMT2-208ENST00000553868 KRTAP6-2Q3LI66 62 aa3.98□□□□□ -1.77
SHMT2-208ENST00000553868 A0A0A0MQY5 61 aa3.96□□□□□ -1.78
SHMT2-208ENST00000553868 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
SHMT2-208ENST00000553868 INE1O15225 51 aa3.74□□□□□ -1.81
SHMT2-208ENST00000553868 LCE3EQ5T5B0 92 aa3.64□□□□□ -1.83
SHMT2-208ENST00000553868 LCE1EQ5T753 118 aa3.51□□□□□ -1.85
SHMT2-208ENST00000553868 KRTAP4-12Q9BQ66 201 aa3.48□□□□□ -1.85
SHMT2-208ENST00000553868 KRTAP4-2Q9BYR5 136 aa3.48□□□□□ -1.85
SHMT2-208ENST00000553868 LCE1BQ5T7P3 118 aa3.44□□□□□ -1.86
SHMT2-208ENST00000553868 PHGR1C9JFL3 82 aa3.29□□□□□ -1.88
SHMT2-208ENST00000553868 LCE1CQ5T751 118 aa3.25□□□□□ -1.89
SHMT2-208ENST00000553868 KRTAP5-11Q6L8G4 156 aa3.21□□□□□ -1.9
SHMT2-208ENST00000553868 PRM1P04553 51 aa3.08□□□□□ -1.92
SHMT2-208ENST00000553868 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
SHMT2-208ENST00000553868 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.03□□□□□ -1.92
SHMT2-208ENST00000553868 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
SHMT2-208ENST00000553868 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
SHMT2-208ENST00000553868 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
SHMT2-208ENST00000553868 KRTAP21-1Q3LI58 79 aa2.46□□□□□ -2.02
SHMT2-208ENST00000553868 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 5.2 ms