RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 MT1LQ93083 61 aa4.66□□□□□ -1.66
HDAC7-228ENST00000548938 MT1EP04732 61 aa4.63□□□□□ -1.67
HDAC7-228ENST00000548938 KRTAP19-4Q3LI73 84 aa4.58□□□□□ -1.68
HDAC7-228ENST00000548938 KRTAP9-2Q9BYQ4 174 aa4.58□□□□□ -1.68
HDAC7-228ENST00000548938 MUC12Q9UKN1 5478 aa4.52□□□□□ -1.69
HDAC7-228ENST00000548938 LOC100996750A0A140TA64 210 aa4.48□□□□□ -1.69
HDAC7-228ENST00000548938 KRTAP4-3Q9BYR4 195 aa4.46□□□□□ -1.7
HDAC7-228ENST00000548938 MACF1Q9UPN3 7388 aaKnown RBP4.45□□□□□ -1.7
HDAC7-228ENST00000548938 CRCT1Q9UGL9 99 aa4.44□□□□□ -1.7
HDAC7-228ENST00000548938 MT1GP13640 62 aa4.41□□□□□ -1.7
HDAC7-228ENST00000548938 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.7
HDAC7-228ENST00000548938 SPRR2FQ96RM1 72 aa4.34□□□□□ -1.71
HDAC7-228ENST00000548938 SYNE2Q8WXH0 6885 aaKnown RBP4.34□□□□□ -1.72
HDAC7-228ENST00000548938 KRTAP19-3Q7Z4W3 81 aa4.32□□□□□ -1.72
HDAC7-228ENST00000548938 KRTAP12-4P60329 112 aa4.31□□□□□ -1.72
HDAC7-228ENST00000548938 MT1MQ8N339 61 aa4.31□□□□□ -1.72
HDAC7-228ENST00000548938 MDN1Q9NU22 5596 aa4.24□□□□□ -1.73
HDAC7-228ENST00000548938 LCE5AQ5TCM9 118 aa4.23□□□□□ -1.73
HDAC7-228ENST00000548938 KRTAP5-9P26371 169 aa4.2□□□□□ -1.74
HDAC7-228ENST00000548938 LCE3BQ5TA77 95 aa4.15□□□□□ -1.75
HDAC7-228ENST00000548938 KRTAP9-6A0A140TA67 174 aa4.13□□□□□ -1.75
HDAC7-228ENST00000548938 LCE1AQ5T7P2 110 aa4.13□□□□□ -1.75
HDAC7-228ENST00000548938 KRTAP4-9Q9BYQ8 210 aa4.12□□□□□ -1.75
HDAC7-228ENST00000548938 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.1□□□□□ -1.75
HDAC7-228ENST00000548938 SPRR2EP22531 72 aa4.06□□□□□ -1.76
HDAC7-228ENST00000548938 SPRR2BP35325 72 aa4.06□□□□□ -1.76
HDAC7-228ENST00000548938 SPRR2AP35326 72 aa4.06□□□□□ -1.76
HDAC7-228ENST00000548938 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
HDAC7-228ENST00000548938 KRTAP6-3Q3LI67 103 aa4.03□□□□□ -1.76
HDAC7-228ENST00000548938 KRTAP6-1Q3LI64 71 aa3.99□□□□□ -1.77
HDAC7-228ENST00000548938 MT1AP04731 61 aa3.98□□□□□ -1.77
HDAC7-228ENST00000548938 KRTAP2-2Q9BYT5 123 aa3.96□□□□□ -1.78
HDAC7-228ENST00000548938 LCE3DQ9BYE3 92 aa3.93□□□□□ -1.78
HDAC7-228ENST00000548938 KRTAP9-7A8MTY7 169 aa3.91□□□□□ -1.78
HDAC7-228ENST00000548938 LCE3EQ5T5B0 92 aa3.89□□□□□ -1.79
HDAC7-228ENST00000548938 SPRR2DP22532 72 aa3.89□□□□□ -1.79
HDAC7-228ENST00000548938 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
HDAC7-228ENST00000548938 PRM1P04553 51 aa3.86□□□□□ -1.79
HDAC7-228ENST00000548938 OBSCNQ5VST9 7968 aa3.82□□□□□ -1.8
HDAC7-228ENST00000548938 NEBP20929 6669 aa3.78□□□□□ -1.8
HDAC7-228ENST00000548938 KRTAP6-2Q3LI66 62 aa3.68□□□□□ -1.82
HDAC7-228ENST00000548938 KRTAP9-4Q9BYQ2 154 aa3.64□□□□□ -1.83
HDAC7-228ENST00000548938 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
HDAC7-228ENST00000548938 KRTAP5-4Q6L8H1 288 aa3.56□□□□□ -1.84
HDAC7-228ENST00000548938 MT3P25713 68 aa3.47□□□□□ -1.85
HDAC7-228ENST00000548938 LCE1DQ5T752 114 aa3.45□□□□□ -1.86
HDAC7-228ENST00000548938 KRTAP4-6Q9BYQ5 205 aa3.42□□□□□ -1.86
HDAC7-228ENST00000548938 MT4P47944 62 aa3.42□□□□□ -1.86
HDAC7-228ENST00000548938 LCE4AQ5TA78 99 aa3.41□□□□□ -1.86
HDAC7-228ENST00000548938 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
HDAC7-228ENST00000548938 HMCN1Q96RW7 5635 aa3.34□□□□□ -1.88
HDAC7-228ENST00000548938 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
HDAC7-228ENST00000548938 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
HDAC7-228ENST00000548938 KRTAP5-3Q6L8H2 238 aa3.2□□□□□ -1.9
HDAC7-228ENST00000548938 LCE1FQ5T754 118 aa3.17□□□□□ -1.9
HDAC7-228ENST00000548938 GPR98Q8WXG9 6306 aa3.11□□□□□ -1.91
HDAC7-228ENST00000548938 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
HDAC7-228ENST00000548938 KRTAP4-11Q9BYQ6 195 aa2.91□□□□□ -1.94
HDAC7-228ENST00000548938 MUC5BQ9HC84 5762 aaPredicted RBP2.89□□□□□ -1.95
HDAC7-228ENST00000548938 KRTAP5-10Q6L8G5 202 aa2.86□□□□□ -1.95
HDAC7-228ENST00000548938 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
HDAC7-228ENST00000548938 AHNAK2Q8IVF2 5795 aa2.81□□□□□ -1.96
HDAC7-228ENST00000548938 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
HDAC7-228ENST00000548938 KRTAP4-2Q9BYR5 136 aa2.75□□□□□ -1.97
HDAC7-228ENST00000548938 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
HDAC7-228ENST00000548938 KRTAP5-7Q6L8G8 165 aa2.74□□□□□ -1.97
HDAC7-228ENST00000548938 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
HDAC7-228ENST00000548938 LCE1CQ5T751 118 aa2.72□□□□□ -1.97
HDAC7-228ENST00000548938 MUC19Q7Z5P9 8384 aa2.63□□□□□ -1.99
HDAC7-228ENST00000548938 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
HDAC7-228ENST00000548938 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
HDAC7-228ENST00000548938 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.55□□□□□ -2
HDAC7-228ENST00000548938 KRTAP21-1Q3LI58 79 aa2.42□□□□□ -2.02
HDAC7-228ENST00000548938 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
HDAC7-228ENST00000548938 KRTAP5-11Q6L8G4 156 aa2.38□□□□□ -2.03
HDAC7-228ENST00000548938 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
HDAC7-228ENST00000548938 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
HDAC7-228ENST00000548938 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 37.5 ms