RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	MT4	P47944	62 aa		6.12	□□□□□ -1.43
CHMP1A-205	ENST00000548650	LCE3A	Q5TA76	89 aa		6.09	□□□□□ -1.43
CHMP1A-205	ENST00000548650	C10orf95	Q9H7T3	257 aa		6.09	□□□□□ -1.43
CHMP1A-205	ENST00000548650	KRTAP4-3	Q9BYR4	195 aa		6.08	□□□□□ -1.44
CHMP1A-205	ENST00000548650	UQCR11	O14957	56 aa		6.07	□□□□□ -1.44
CHMP1A-205	ENST00000548650	AHNAK2	Q8IVF2	5795 aa		6.05	□□□□□ -1.44
CHMP1A-205	ENST00000548650	KRTAP5-4	Q6L8H1	288 aa		6.05	□□□□□ -1.44
CHMP1A-205	ENST00000548650	TNP1	P09430	55 aa		6.01	□□□□□ -1.45
CHMP1A-205	ENST00000548650	MIR22HG	Q0VDD5	57 aa		5.96	□□□□□ -1.46
CHMP1A-205	ENST00000548650	PSPHP1	O15172	72 aa		5.95	□□□□□ -1.46
CHMP1A-205	ENST00000548650	KRTAP4-6	Q9BYQ5	205 aa		5.95	□□□□□ -1.46
CHMP1A-205	ENST00000548650		V9GYY9	64 aa		5.94	□□□□□ -1.46
CHMP1A-205	ENST00000548650		Q1T7F1	81 aa		5.92	□□□□□ -1.46
CHMP1A-205	ENST00000548650	PCP4	P48539	62 aa		5.91	□□□□□ -1.46
CHMP1A-205	ENST00000548650	KRTAP5-10	Q6L8G5	202 aa		5.91	□□□□□ -1.46
CHMP1A-205	ENST00000548650	KRTAP4-7	Q9BYR0	210 aa		5.88	□□□□□ -1.47
CHMP1A-205	ENST00000548650	KRTAP12-3	P60328	96 aa		5.85	□□□□□ -1.47
CHMP1A-205	ENST00000548650		K7ERS5	55 aa		5.8	□□□□□ -1.48
CHMP1A-205	ENST00000548650		A6NED7	52 aa		5.74	□□□□□ -1.49
CHMP1A-205	ENST00000548650	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.74	□□□□□ -1.49
CHMP1A-205	ENST00000548650	RPS28	P62857	69 aa	Known RBP	5.72	□□□□□ -1.49
CHMP1A-205	ENST00000548650	KRTAP5-3	Q6L8H2	238 aa		5.72	□□□□□ -1.49
CHMP1A-205	ENST00000548650	KRTAP20-2	Q3LI61	65 aa		5.71	□□□□□ -1.5
CHMP1A-205	ENST00000548650	KRTAP25-1	Q3LHN0	102 aa		5.7	□□□□□ -1.5
CHMP1A-205	ENST00000548650	KRTAP5-7	Q6L8G8	165 aa		5.69	□□□□□ -1.5
CHMP1A-205	ENST00000548650	SPRR5	A0A1B0GTR4	108 aa		5.65	□□□□□ -1.5
CHMP1A-205	ENST00000548650	LOC100996750	A0A140TA64	210 aa		5.57	□□□□□ -1.52
CHMP1A-205	ENST00000548650	KRTAP12-4	P60329	112 aa		5.57	□□□□□ -1.52
CHMP1A-205	ENST00000548650	CDC42SE1	Q9NRR8	79 aa		5.52	□□□□□ -1.53
CHMP1A-205	ENST00000548650	SYNE1	Q8NF91	8797 aa	Known RBP	5.48	□□□□□ -1.53
CHMP1A-205	ENST00000548650	KRTAP23-1	A1A580	65 aa		5.46	□□□□□ -1.54
CHMP1A-205	ENST00000548650	KRTAP19-4	Q3LI73	84 aa		5.46	□□□□□ -1.54
CHMP1A-205	ENST00000548650	ROMO1	P60602	79 aa		5.45	□□□□□ -1.54
CHMP1A-205	ENST00000548650	KRTAP15-1	Q3LI76	137 aa		5.38	□□□□□ -1.55
CHMP1A-205	ENST00000548650	LCE3C	Q5T5A8	94 aa		5.36	□□□□□ -1.55
CHMP1A-205	ENST00000548650	KRTAP5-2	Q701N4	177 aa		5.28	□□□□□ -1.56
CHMP1A-205	ENST00000548650	MT1A	P04731	61 aa		5.26	□□□□□ -1.57
CHMP1A-205	ENST00000548650	KRTAP4-11	Q9BYQ6	195 aa		5.25	□□□□□ -1.57
CHMP1A-205	ENST00000548650	KRTAP6-1	Q3LI64	71 aa		5.24	□□□□□ -1.57
CHMP1A-205	ENST00000548650	KRTAP9-6	A8MVA2	160 aa		5.11	□□□□□ -1.59
CHMP1A-205	ENST00000548650	KRTAP5-8	O75690	187 aa		5.09	□□□□□ -1.59
CHMP1A-205	ENST00000548650	BRK1	Q8WUW1	75 aa		5.09	□□□□□ -1.59
CHMP1A-205	ENST00000548650	KRTAP9-4	Q9BYQ2	154 aa		5.08	□□□□□ -1.6
CHMP1A-205	ENST00000548650	KRTAP6-2	Q3LI66	62 aa		5.04	□□□□□ -1.6
CHMP1A-205	ENST00000548650	AHNAK	Q09666	5890 aa	Known RBP	5.04	□□□□□ -1.6
CHMP1A-205	ENST00000548650	MUC5AC	P98088	5654 aa		5.03	□□□□□ -1.6
CHMP1A-205	ENST00000548650	MUC5B	Q9HC84	5762 aa	Predicted RBP	5	□□□□□ -1.61
CHMP1A-205	ENST00000548650	SVIP	Q8NHG7	77 aa		4.91	□□□□□ -1.62
CHMP1A-205	ENST00000548650	OBSCN	Q5VST9	7968 aa		4.89	□□□□□ -1.63
CHMP1A-205	ENST00000548650	KRTAP9-9	Q9BYP9	154 aa		4.82	□□□□□ -1.64
CHMP1A-205	ENST00000548650	MT3	P25713	68 aa		4.79	□□□□□ -1.64
CHMP1A-205	ENST00000548650	PMAIP1	Q13794	54 aa		4.77	□□□□□ -1.65
CHMP1A-205	ENST00000548650	KRTAP5-1	Q6L8H4	278 aa		4.76	□□□□□ -1.65
CHMP1A-205	ENST00000548650	PRO0628	Q9UI54	55 aa		4.76	□□□□□ -1.65
CHMP1A-205	ENST00000548650	PRAC1	Q96KF2	57 aa		4.61	□□□□□ -1.67
CHMP1A-205	ENST00000548650	LCE1E	Q5T753	118 aa		4.46	□□□□□ -1.7
CHMP1A-205	ENST00000548650	KTN1-AS1	Q86SY8	53 aa		4.39	□□□□□ -1.71
CHMP1A-205	ENST00000548650	KRTAP4-2	Q9BYR5	136 aa		4.27	□□□□□ -1.73
CHMP1A-205	ENST00000548650	LCE1B	Q5T7P3	118 aa		4.2	□□□□□ -1.74
CHMP1A-205	ENST00000548650	LCE1C	Q5T751	118 aa		4.14	□□□□□ -1.75
CHMP1A-205	ENST00000548650	KRTAP4-12	Q9BQ66	201 aa		3.9	□□□□□ -1.79
CHMP1A-205	ENST00000548650	LUZP6	Q538Z0	58 aa		3.83	□□□□□ -1.8
CHMP1A-205	ENST00000548650	LCE3D	Q9BYE3	92 aa		3.81	□□□□□ -1.8
CHMP1A-205	ENST00000548650	KRTAP5-11	Q6L8G4	156 aa		3.79	□□□□□ -1.8
CHMP1A-205	ENST00000548650	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.77	□□□□□ -1.81
CHMP1A-205	ENST00000548650	LCE1F	Q5T754	118 aa		3.7	□□□□□ -1.82
CHMP1A-205	ENST00000548650	LCE3E	Q5T5B0	92 aa		3.61	□□□□□ -1.83
CHMP1A-205	ENST00000548650	NDUFAF8	A1L188	74 aa		3.48	□□□□□ -1.85
CHMP1A-205	ENST00000548650		H3BS24	57 aa		3.48	□□□□□ -1.85
CHMP1A-205	ENST00000548650	KRTAP21-2	Q3LI59	83 aa		3.47	□□□□□ -1.85
CHMP1A-205	ENST00000548650	PHGR1	C9JFL3	82 aa		3.43	□□□□□ -1.86
CHMP1A-205	ENST00000548650	KRTAP4-4	Q9BYR3	166 aa		3.18	□□□□□ -1.9
CHMP1A-205	ENST00000548650		A0A0A0MQY5	61 aa		3.15	□□□□□ -1.91
CHMP1A-205	ENST00000548650	MUC19	Q7Z5P9	8384 aa		3.04	□□□□□ -1.92
CHMP1A-205	ENST00000548650	INE1	O15225	51 aa		2.87	□□□□□ -1.95
CHMP1A-205	ENST00000548650	PRM1	P04553	51 aa		2.81	□□□□□ -1.96
CHMP1A-205	ENST00000548650	KRTAP21-1	Q3LI58	79 aa		2.6	□□□□□ -1.99
CHMP1A-205	ENST00000548650	MUC16	Q8WXI7	14507 aa		2.13	□□□□□ -2.07

Retrieved 78 of 20,778 RNA–protein pairs in 99.5 ms