RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 MT1LQ93083 61 aa4.74□□□□□ -1.65
CPSF6-204ENST00000547486 A8MU10 97 aa4.73□□□□□ -1.65
CPSF6-204ENST00000547486 SMIM26A0A096LP01 95 aa4.69□□□□□ -1.66
CPSF6-204ENST00000547486 A0A1B0GU69 56 aa4.69□□□□□ -1.66
CPSF6-204ENST00000547486 MT4P47944 62 aa4.69□□□□□ -1.66
CPSF6-204ENST00000547486 KRTAP4-3Q9BYR4 195 aa4.69□□□□□ -1.66
CPSF6-204ENST00000547486 LCE3AQ5TA76 89 aa4.68□□□□□ -1.66
CPSF6-204ENST00000547486 C10orf95Q9H7T3 257 aa4.68□□□□□ -1.66
CPSF6-204ENST00000547486 HMCN1Q96RW7 5635 aa4.67□□□□□ -1.66
CPSF6-204ENST00000547486 TNP1P09430 55 aa4.62□□□□□ -1.67
CPSF6-204ENST00000547486 KRTAP5-4Q6L8H1 288 aa4.61□□□□□ -1.67
CPSF6-204ENST00000547486 ANAPC13Q9BS18 74 aa4.53□□□□□ -1.68
CPSF6-204ENST00000547486 AHNAK2Q8IVF2 5795 aa4.53□□□□□ -1.68
CPSF6-204ENST00000547486 CCDC179H3BU77 68 aa4.5□□□□□ -1.69
CPSF6-204ENST00000547486 KRTAP12-3P60328 96 aa4.49□□□□□ -1.69
CPSF6-204ENST00000547486 KRTAP5-10Q6L8G5 202 aa4.47□□□□□ -1.69
CPSF6-204ENST00000547486 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
CPSF6-204ENST00000547486 LINC01558Q9Y6Z2 57 aa4.46□□□□□ -1.7
CPSF6-204ENST00000547486 H3BS24 57 aa4.42□□□□□ -1.7
CPSF6-204ENST00000547486 PCP4P48539 62 aa4.39□□□□□ -1.71
CPSF6-204ENST00000547486 ATP5EP56381 51 aaPredicted RBP4.39□□□□□ -1.71
CPSF6-204ENST00000547486 KRTAP5-5Q701N2 237 aaPredicted RBP4.38□□□□□ -1.71
CPSF6-204ENST00000547486 UQCR11O14957 56 aa4.35□□□□□ -1.71
CPSF6-204ENST00000547486 KRTAP20-2Q3LI61 65 aa4.35□□□□□ -1.71
CPSF6-204ENST00000547486 KRTAP5-7Q6L8G8 165 aa4.31□□□□□ -1.72
CPSF6-204ENST00000547486 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
CPSF6-204ENST00000547486 KRTAP25-1Q3LHN0 102 aa4.29□□□□□ -1.72
CPSF6-204ENST00000547486 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
CPSF6-204ENST00000547486 TMEM258P61165 79 aa4.25□□□□□ -1.73
CPSF6-204ENST00000547486 MIR22HGQ0VDD5 57 aa4.25□□□□□ -1.73
CPSF6-204ENST00000547486 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
CPSF6-204ENST00000547486 K7ERS5 55 aa4.15□□□□□ -1.75
CPSF6-204ENST00000547486 KRTAP15-1Q3LI76 137 aa4.15□□□□□ -1.75
CPSF6-204ENST00000547486 LCE3CQ5T5A8 94 aa4.14□□□□□ -1.75
CPSF6-204ENST00000547486 KRTAP23-1A1A580 65 aa4.12□□□□□ -1.75
CPSF6-204ENST00000547486 PSPHP1O15172 72 aa4.12□□□□□ -1.75
CPSF6-204ENST00000547486 Q1T7F1 81 aa4.05□□□□□ -1.76
CPSF6-204ENST00000547486 V9GYY9 64 aa4.04□□□□□ -1.76
CPSF6-204ENST00000547486 KRTAP6-1Q3LI64 71 aa4.03□□□□□ -1.76
CPSF6-204ENST00000547486 MT1AP04731 61 aa4.02□□□□□ -1.77
CPSF6-204ENST00000547486 KRTAP5-2Q701N4 177 aa4.02□□□□□ -1.77
CPSF6-204ENST00000547486 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
CPSF6-204ENST00000547486 A6NED7 52 aa3.93□□□□□ -1.78
CPSF6-204ENST00000547486 CDC42SE1Q9NRR8 79 aa3.93□□□□□ -1.78
CPSF6-204ENST00000547486 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.92□□□□□ -1.78
CPSF6-204ENST00000547486 KRTAP5-8O75690 187 aa3.89□□□□□ -1.79
CPSF6-204ENST00000547486 ROMO1P60602 79 aa3.89□□□□□ -1.79
CPSF6-204ENST00000547486 KRTAP6-2Q3LI66 62 aa3.88□□□□□ -1.79
CPSF6-204ENST00000547486 RPS28P62857 69 aaKnown RBP3.86□□□□□ -1.79
CPSF6-204ENST00000547486 A0A0A0MQY5 61 aa3.84□□□□□ -1.79
CPSF6-204ENST00000547486 OBSCNQ5VST9 7968 aa3.82□□□□□ -1.8
CPSF6-204ENST00000547486 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
CPSF6-204ENST00000547486 MUC5BQ9HC84 5762 aaPredicted RBP3.74□□□□□ -1.81
CPSF6-204ENST00000547486 MUC5ACP98088 5654 aa3.74□□□□□ -1.81
CPSF6-204ENST00000547486 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
CPSF6-204ENST00000547486 MT3P25713 68 aa3.68□□□□□ -1.82
CPSF6-204ENST00000547486 PRO0628Q9UI54 55 aa3.68□□□□□ -1.82
CPSF6-204ENST00000547486 KRTAP5-1Q6L8H4 278 aa3.63□□□□□ -1.83
CPSF6-204ENST00000547486 PMAIP1Q13794 54 aa3.52□□□□□ -1.85
CPSF6-204ENST00000547486 LCE1EQ5T753 118 aa3.41□□□□□ -1.86
CPSF6-204ENST00000547486 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
CPSF6-204ENST00000547486 KTN1-AS1Q86SY8 53 aa3.25□□□□□ -1.89
CPSF6-204ENST00000547486 LCE1BQ5T7P3 118 aa3.24□□□□□ -1.89
CPSF6-204ENST00000547486 BRK1Q8WUW1 75 aa3.19□□□□□ -1.9
CPSF6-204ENST00000547486 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
CPSF6-204ENST00000547486 PRAC1Q96KF2 57 aa3.1□□□□□ -1.91
CPSF6-204ENST00000547486 LCE3DQ9BYE3 92 aa2.94□□□□□ -1.94
CPSF6-204ENST00000547486 LUZP6Q538Z0 58 aa2.93□□□□□ -1.94
CPSF6-204ENST00000547486 LCE1FQ5T754 118 aa2.81□□□□□ -1.96
CPSF6-204ENST00000547486 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
CPSF6-204ENST00000547486 KRTAP21-2Q3LI59 83 aa2.66□□□□□ -1.98
CPSF6-204ENST00000547486 NDUFAF8A1L188 74 aa2.62□□□□□ -1.99
CPSF6-204ENST00000547486 PHGR1C9JFL3 82 aa2.59□□□□□ -1.99
CPSF6-204ENST00000547486 INE1O15225 51 aa2.34□□□□□ -2.03
CPSF6-204ENST00000547486 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
CPSF6-204ENST00000547486 PRM1P04553 51 aa1.99□□□□□ -2.09
CPSF6-204ENST00000547486 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
CPSF6-204ENST00000547486 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 572.3 ms