RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 KMT2DO14686 5537 aa3.02□□□□□ -1.93
TDP1-204ENST00000545686 MT1LQ93083 61 aa3□□□□□ -1.93
TDP1-204ENST00000545686 MT1EP04732 61 aa2.99□□□□□ -1.93
TDP1-204ENST00000545686 KRTAP9-9Q9BYP9 154 aa2.97□□□□□ -1.93
TDP1-204ENST00000545686 KRTAP4-7Q9BYR0 210 aa2.97□□□□□ -1.93
TDP1-204ENST00000545686 USH2AO75445 5202 aa2.96□□□□□ -1.94
TDP1-204ENST00000545686 LCE5AQ5TCM9 118 aa2.94□□□□□ -1.94
TDP1-204ENST00000545686 SSPOA2VEC9 5147 aa2.91□□□□□ -1.94
TDP1-204ENST00000545686 KRTAP19-6Q3LI70 58 aa2.85□□□□□ -1.95
TDP1-204ENST00000545686 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.84□□□□□ -1.95
TDP1-204ENST00000545686 MT1GP13640 62 aa2.78□□□□□ -1.96
TDP1-204ENST00000545686 MT1MQ8N339 61 aa2.78□□□□□ -1.96
TDP1-204ENST00000545686 KRTAP19-3Q7Z4W3 81 aa2.78□□□□□ -1.96
TDP1-204ENST00000545686 LOC100996750A0A140TA64 210 aa2.77□□□□□ -1.97
TDP1-204ENST00000545686 KRTAP4-3Q9BYR4 195 aa2.76□□□□□ -1.97
TDP1-204ENST00000545686 KRTAP12-4P60329 112 aa2.7□□□□□ -1.98
TDP1-204ENST00000545686 KRTAP4-12Q9BQ66 201 aa2.69□□□□□ -1.98
TDP1-204ENST00000545686 FCGBPQ9Y6R7 5405 aaPredicted RBP2.66□□□□□ -1.98
TDP1-204ENST00000545686 KRTAP20-1Q3LI63 56 aa2.64□□□□□ -1.99
TDP1-204ENST00000545686 MUC12Q9UKN1 5478 aa2.64□□□□□ -1.99
TDP1-204ENST00000545686 MT1AP04731 61 aa2.62□□□□□ -1.99
TDP1-204ENST00000545686 LCE1AQ5T7P2 110 aa2.59□□□□□ -2
TDP1-204ENST00000545686 LCE3BQ5TA77 95 aa2.59□□□□□ -2
TDP1-204ENST00000545686 SPRR2FQ96RM1 72 aa2.58□□□□□ -2
TDP1-204ENST00000545686 LCE1FQ5T754 118 aa2.57□□□□□ -2
TDP1-204ENST00000545686 FSIP2Q5CZC0 6907 aa2.56□□□□□ -2
TDP1-204ENST00000545686 GPR98Q8WXG9 6306 aa2.56□□□□□ -2
TDP1-204ENST00000545686 KRTAP4-6Q9BYQ5 205 aa2.56□□□□□ -2
TDP1-204ENST00000545686 KRTAP6-3Q3LI67 103 aa2.53□□□□□ -2
TDP1-204ENST00000545686 KRTAP6-1Q3LI64 71 aa2.52□□□□□ -2.01
TDP1-204ENST00000545686 LCE3DQ9BYE3 92 aa2.51□□□□□ -2.01
TDP1-204ENST00000545686 KRTAP4-9Q9BYQ8 210 aa2.51□□□□□ -2.01
TDP1-204ENST00000545686 NEBP20929 6669 aa2.5□□□□□ -2.01
TDP1-204ENST00000545686 LCE3EQ5T5B0 92 aa2.49□□□□□ -2.01
TDP1-204ENST00000545686 DSTQ03001 7570 aaKnown RBP2.48□□□□□ -2.01
TDP1-204ENST00000545686 KRTAP5-5Q701N2 237 aaPredicted RBP2.47□□□□□ -2.01
TDP1-204ENST00000545686 SYNE1Q8NF91 8797 aaKnown RBP2.44□□□□□ -2.02
TDP1-204ENST00000545686 MACF1Q9UPN3 7388 aaKnown RBP2.44□□□□□ -2.02
TDP1-204ENST00000545686 KRTAP2-2Q9BYT5 123 aa2.42□□□□□ -2.02
TDP1-204ENST00000545686 PRM1P04553 51 aa2.41□□□□□ -2.02
TDP1-204ENST00000545686 KRTAP5-9P26371 169 aa2.41□□□□□ -2.02
TDP1-204ENST00000545686 MT3P25713 68 aa2.39□□□□□ -2.03
TDP1-204ENST00000545686 SPRR2EP22531 72 aa2.32□□□□□ -2.04
TDP1-204ENST00000545686 SPRR2BP35325 72 aa2.32□□□□□ -2.04
TDP1-204ENST00000545686 SPRR2AP35326 72 aa2.32□□□□□ -2.04
TDP1-204ENST00000545686 SYNE2Q8WXH0 6885 aaKnown RBP2.32□□□□□ -2.04
TDP1-204ENST00000545686 MDN1Q9NU22 5596 aa2.32□□□□□ -2.04
TDP1-204ENST00000545686 KRTAP6-2Q3LI66 62 aa2.31□□□□□ -2.04
TDP1-204ENST00000545686 LCE1DQ5T752 114 aa2.31□□□□□ -2.04
TDP1-204ENST00000545686 SPRR2DP22532 72 aa2.23□□□□□ -2.05
TDP1-204ENST00000545686 KRTAP4-11Q9BYQ6 195 aa2.22□□□□□ -2.05
TDP1-204ENST00000545686 KRTAP5-7Q6L8G8 165 aa2.21□□□□□ -2.06
TDP1-204ENST00000545686 MUC5BQ9HC84 5762 aaPredicted RBP2.17□□□□□ -2.06
TDP1-204ENST00000545686 AHNAKQ09666 5890 aaKnown RBP2.14□□□□□ -2.07
TDP1-204ENST00000545686 LCE1EQ5T753 118 aa2.13□□□□□ -2.07
TDP1-204ENST00000545686 KRTAP5-4Q6L8H1 288 aa2.12□□□□□ -2.07
TDP1-204ENST00000545686 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
TDP1-204ENST00000545686 KRTAP5-10Q6L8G5 202 aa2.1□□□□□ -2.07
TDP1-204ENST00000545686 OBSCNQ5VST9 7968 aa2.08□□□□□ -2.08
TDP1-204ENST00000545686 KRTAP4-2Q9BYR5 136 aa2.06□□□□□ -2.08
TDP1-204ENST00000545686 KRTAP5-2Q701N4 177 aa2.02□□□□□ -2.09
TDP1-204ENST00000545686 KRTAP20-2Q3LI61 65 aa1.96□□□□□ -2.1
TDP1-204ENST00000545686 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
TDP1-204ENST00000545686 MT4P47944 62 aa1.92□□□□□ -2.1
TDP1-204ENST00000545686 KRTAP5-3Q6L8H2 238 aa1.92□□□□□ -2.1
TDP1-204ENST00000545686 MUC5ACP98088 5654 aa1.9□□□□□ -2.11
TDP1-204ENST00000545686 KRTAP5-1Q6L8H4 278 aa1.82□□□□□ -2.12
TDP1-204ENST00000545686 LCE1BQ5T7P3 118 aa1.76□□□□□ -2.13
TDP1-204ENST00000545686 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
TDP1-204ENST00000545686 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.68□□□□□ -2.14
TDP1-204ENST00000545686 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
TDP1-204ENST00000545686 KRTAP5-8O75690 187 aa1.57□□□□□ -2.16
TDP1-204ENST00000545686 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
TDP1-204ENST00000545686 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
TDP1-204ENST00000545686 KRTAP4-4Q9BYR3 166 aa1.43□□□□□ -2.18
TDP1-204ENST00000545686 MUC19Q7Z5P9 8384 aa1.39□□□□□ -2.19
TDP1-204ENST00000545686 PHGR1C9JFL3 82 aa1.28□□□□□ -2.2
TDP1-204ENST00000545686 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 215.1 ms