RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 KRTAP19-3Q7Z4W3 81 aa4.37□□□□□ -1.71
HDAC4-216ENST00000544989 LCE5AQ5TCM9 118 aa4.36□□□□□ -1.71
HDAC4-216ENST00000544989 AHNAK2Q8IVF2 5795 aa4.35□□□□□ -1.71
HDAC4-216ENST00000544989 KRTAP19-5Q3LI72 72 aa4.32□□□□□ -1.72
HDAC4-216ENST00000544989 KRTAP4-9Q9BYQ8 210 aa4.31□□□□□ -1.72
HDAC4-216ENST00000544989 C10orf95Q9H7T3 257 aa4.31□□□□□ -1.72
HDAC4-216ENST00000544989 PP632Q6XCG6 107 aa4.3□□□□□ -1.72
HDAC4-216ENST00000544989 A6NED7 52 aa4.29□□□□□ -1.72
HDAC4-216ENST00000544989 MT1GP13640 62 aa4.29□□□□□ -1.72
HDAC4-216ENST00000544989 CDC42SE1Q9NRR8 79 aa4.26□□□□□ -1.73
HDAC4-216ENST00000544989 MIR22HGQ0VDD5 57 aa4.25□□□□□ -1.73
HDAC4-216ENST00000544989 LCE3AQ5TA76 89 aa4.25□□□□□ -1.73
HDAC4-216ENST00000544989 K7ERS5 55 aa4.24□□□□□ -1.73
HDAC4-216ENST00000544989 KRTAP5-10Q6L8G5 202 aa4.22□□□□□ -1.73
HDAC4-216ENST00000544989 MT1LQ93083 61 aa4.21□□□□□ -1.74
HDAC4-216ENST00000544989 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
HDAC4-216ENST00000544989 PMAIP1Q13794 54 aa4.18□□□□□ -1.74
HDAC4-216ENST00000544989 KRTAP25-1Q3LHN0 102 aa4.17□□□□□ -1.74
HDAC4-216ENST00000544989 MT1MQ8N339 61 aa4.17□□□□□ -1.74
HDAC4-216ENST00000544989 KRTAP12-3P60328 96 aa4.13□□□□□ -1.75
HDAC4-216ENST00000544989 KRTAP5-7Q6L8G8 165 aa4.13□□□□□ -1.75
HDAC4-216ENST00000544989 LCE4AQ5TA78 99 aa4.1□□□□□ -1.75
HDAC4-216ENST00000544989 KTN1-AS1Q86SY8 53 aa4.07□□□□□ -1.76
HDAC4-216ENST00000544989 KRTAP23-1A1A580 65 aa4.05□□□□□ -1.76
HDAC4-216ENST00000544989 KRTAP19-4Q3LI73 84 aa4.03□□□□□ -1.76
HDAC4-216ENST00000544989 MT4P47944 62 aa4.01□□□□□ -1.77
HDAC4-216ENST00000544989 KRTAP5-4Q6L8H1 288 aa4□□□□□ -1.77
HDAC4-216ENST00000544989 KRTAP4-3Q9BYR4 195 aa3.99□□□□□ -1.77
HDAC4-216ENST00000544989 KRTAP5-3Q6L8H2 238 aa3.97□□□□□ -1.77
HDAC4-216ENST00000544989 KRTAP4-6Q9BYQ5 205 aa3.93□□□□□ -1.78
HDAC4-216ENST00000544989 PRAC1Q96KF2 57 aa3.92□□□□□ -1.78
HDAC4-216ENST00000544989 KRTAP4-7Q9BYR0 210 aa3.92□□□□□ -1.78
HDAC4-216ENST00000544989 ROMO1P60602 79 aa3.89□□□□□ -1.79
HDAC4-216ENST00000544989 KRTAP15-1Q3LI76 137 aa3.89□□□□□ -1.79
HDAC4-216ENST00000544989 KRTAP5-5Q701N2 237 aaPredicted RBP3.82□□□□□ -1.8
HDAC4-216ENST00000544989 SPRR5A0A1B0GTR4 108 aa3.8□□□□□ -1.8
HDAC4-216ENST00000544989 LCE3CQ5T5A8 94 aa3.8□□□□□ -1.8
HDAC4-216ENST00000544989 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
HDAC4-216ENST00000544989 AHNAKQ09666 5890 aaKnown RBP3.76□□□□□ -1.81
HDAC4-216ENST00000544989 KRTAP20-2Q3LI61 65 aa3.74□□□□□ -1.81
HDAC4-216ENST00000544989 MUC5BQ9HC84 5762 aaPredicted RBP3.73□□□□□ -1.81
HDAC4-216ENST00000544989 LOC100996750A0A140TA64 210 aa3.72□□□□□ -1.81
HDAC4-216ENST00000544989 MUC5ACP98088 5654 aa3.68□□□□□ -1.82
HDAC4-216ENST00000544989 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
HDAC4-216ENST00000544989 MT1AP04731 61 aa3.6□□□□□ -1.83
HDAC4-216ENST00000544989 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
HDAC4-216ENST00000544989 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
HDAC4-216ENST00000544989 KRTAP9-6A8MVA2 160 aa3.51□□□□□ -1.85
HDAC4-216ENST00000544989 KRTAP5-2Q701N4 177 aa3.48□□□□□ -1.85
HDAC4-216ENST00000544989 KRTAP9-4Q9BYQ2 154 aa3.47□□□□□ -1.85
HDAC4-216ENST00000544989 KRTAP5-8O75690 187 aa3.45□□□□□ -1.86
HDAC4-216ENST00000544989 OBSCNQ5VST9 7968 aa3.4□□□□□ -1.87
HDAC4-216ENST00000544989 KRTAP6-2Q3LI66 62 aa3.38□□□□□ -1.87
HDAC4-216ENST00000544989 MT3P25713 68 aa3.32□□□□□ -1.88
HDAC4-216ENST00000544989 KRTAP9-9Q9BYP9 154 aa3.3□□□□□ -1.88
HDAC4-216ENST00000544989 NDUFAF8A1L188 74 aa3.22□□□□□ -1.89
HDAC4-216ENST00000544989 H3BS24 57 aa3.21□□□□□ -1.9
HDAC4-216ENST00000544989 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
HDAC4-216ENST00000544989 LUZP6Q538Z0 58 aa3.11□□□□□ -1.91
HDAC4-216ENST00000544989 LCE1EQ5T753 118 aa3.04□□□□□ -1.92
HDAC4-216ENST00000544989 A0A0A0MQY5 61 aa2.88□□□□□ -1.95
HDAC4-216ENST00000544989 LCE1CQ5T751 118 aa2.82□□□□□ -1.96
HDAC4-216ENST00000544989 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
HDAC4-216ENST00000544989 KRTAP4-2Q9BYR5 136 aa2.8□□□□□ -1.96
HDAC4-216ENST00000544989 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
HDAC4-216ENST00000544989 INE1O15225 51 aa2.67□□□□□ -1.98
HDAC4-216ENST00000544989 LCE3EQ5T5B0 92 aa2.61□□□□□ -1.99
HDAC4-216ENST00000544989 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
HDAC4-216ENST00000544989 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
HDAC4-216ENST00000544989 KRTAP4-12Q9BQ66 201 aa2.52□□□□□ -2.01
HDAC4-216ENST00000544989 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
HDAC4-216ENST00000544989 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
HDAC4-216ENST00000544989 KRTAP21-2Q3LI59 83 aa2.33□□□□□ -2.04
HDAC4-216ENST00000544989 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
HDAC4-216ENST00000544989 KRTAP4-4Q9BYR3 166 aa2.08□□□□□ -2.08
HDAC4-216ENST00000544989 PRM1P04553 51 aa2□□□□□ -2.09
HDAC4-216ENST00000544989 KRTAP21-1Q3LI58 79 aa1.87□□□□□ -2.11
HDAC4-216ENST00000544989 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 11.6 ms