RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MUC5BQ9HC84 5762 aaPredicted RBP1.66□□□□□ -2.14
LIMS1-214ENST00000542845 NAA38Q9BRA0 125 aaKnown RBP1.65□□□□□ -2.15
LIMS1-214ENST00000542845 VAMP8Q9BV40 100 aa1.65□□□□□ -2.15
LIMS1-214ENST00000542845 TP53AIP1Q9HCN2 124 aa1.65□□□□□ -2.15
LIMS1-214ENST00000542845 KRTAP12-4P60329 112 aa1.64□□□□□ -2.15
LIMS1-214ENST00000542845 HSD52Q0P140 79 aa1.64□□□□□ -2.15
LIMS1-214ENST00000542845 LCE3AQ5TA76 89 aa1.64□□□□□ -2.15
LIMS1-214ENST00000542845 LCE3DQ9BYE3 92 aa1.64□□□□□ -2.15
LIMS1-214ENST00000542845 TRAV22A0A0B4J277 110 aa1.63□□□□□ -2.15
LIMS1-214ENST00000542845 A0A0D9SG42 100 aa1.63□□□□□ -2.15
LIMS1-214ENST00000542845 MT1LQ93083 61 aa1.63□□□□□ -2.15
LIMS1-214ENST00000542845 LOC101927531A0A1B0GV80 90 aa1.62□□□□□ -2.15
LIMS1-214ENST00000542845 TSTD3H0UI37 97 aa1.61□□□□□ -2.15
LIMS1-214ENST00000542845 TAX1BP3O14907 124 aa1.61□□□□□ -2.15
LIMS1-214ENST00000542845 S100A1P23297 94 aa1.61□□□□□ -2.15
LIMS1-214ENST00000542845 SPCS1Q9Y6A9 102 aa1.58□□□□□ -2.16
LIMS1-214ENST00000542845 UBL5Q9BZL1 73 aa1.57□□□□□ -2.16
LIMS1-214ENST00000542845 SYNE1Q8NF91 8797 aaKnown RBP1.56□□□□□ -2.16
LIMS1-214ENST00000542845 H0Y9P7 68 aa1.55□□□□□ -2.16
LIMS1-214ENST00000542845 KRTAP5-5Q701N2 237 aaPredicted RBP1.55□□□□□ -2.16
LIMS1-214ENST00000542845 COA5Q86WW8 74 aa1.55□□□□□ -2.16
LIMS1-214ENST00000542845 Q1T7F1 81 aa1.53□□□□□ -2.16
LIMS1-214ENST00000542845 C10orf95Q9H7T3 257 aa1.53□□□□□ -2.16
LIMS1-214ENST00000542845 ATOX1O00244 68 aa1.52□□□□□ -2.17
LIMS1-214ENST00000542845 UQCR10Q9UDW1 63 aa1.52□□□□□ -2.17
LIMS1-214ENST00000542845 LINC00208Q96KT6 92 aa1.51□□□□□ -2.17
LIMS1-214ENST00000542845 UQCRQO14949 82 aa1.49□□□□□ -2.17
LIMS1-214ENST00000542845 KRTAP13-4Q3LI77 160 aa1.48□□□□□ -2.17
LIMS1-214ENST00000542845 SNURFQ9Y675 71 aa1.47□□□□□ -2.17
LIMS1-214ENST00000542845 M0R143 59 aa1.46□□□□□ -2.18
LIMS1-214ENST00000542845 KRTAP12-1P59990 96 aa1.46□□□□□ -2.18
LIMS1-214ENST00000542845 PYY3Q5JQD4 70 aa1.46□□□□□ -2.18
LIMS1-214ENST00000542845 LCE1CQ5T751 118 aa1.45□□□□□ -2.18
LIMS1-214ENST00000542845 LCE1BQ5T7P3 118 aa1.45□□□□□ -2.18
LIMS1-214ENST00000542845 DMAC1Q96GE9 116 aa1.45□□□□□ -2.18
LIMS1-214ENST00000542845 SPTSSBQ8NFR3 76 aa1.44□□□□□ -2.18
LIMS1-214ENST00000542845 LOC105371267A0A1B0GV96 52 aa1.43□□□□□ -2.18
LIMS1-214ENST00000542845 SCGB1A1P11684 91 aa1.43□□□□□ -2.18
LIMS1-214ENST00000542845 KRTAP12-3P60328 96 aa1.42□□□□□ -2.18
LIMS1-214ENST00000542845 ROMO1P60602 79 aa1.42□□□□□ -2.18
LIMS1-214ENST00000542845 KRTAP6-2Q3LI66 62 aa1.42□□□□□ -2.18
LIMS1-214ENST00000542845 BRK1Q8WUW1 75 aa1.42□□□□□ -2.18
LIMS1-214ENST00000542845 CHKB-CPT1BH3BT56 60 aa1.41□□□□□ -2.18
LIMS1-214ENST00000542845 RPS28P62857 69 aaKnown RBP1.41□□□□□ -2.18
LIMS1-214ENST00000542845 KRTAP6-1Q3LI64 71 aa1.41□□□□□ -2.18
LIMS1-214ENST00000542845 CDC42SE1Q9NRR8 79 aa1.41□□□□□ -2.18
LIMS1-214ENST00000542845 F8W1H4 67 aa1.4□□□□□ -2.19
LIMS1-214ENST00000542845 ACYP2P14621 99 aa1.4□□□□□ -2.19
LIMS1-214ENST00000542845 TNP1P09430 55 aa1.39□□□□□ -2.19
LIMS1-214ENST00000542845 MT1AP04731 61 aa1.38□□□□□ -2.19
LIMS1-214ENST00000542845 SPATA8Q6RVD6 105 aa1.38□□□□□ -2.19
LIMS1-214ENST00000542845 J3QR89 54 aa1.35□□□□□ -2.19
LIMS1-214ENST00000542845 COX7CP15954 63 aa1.34□□□□□ -2.19
LIMS1-214ENST00000542845 MIR22HGQ0VDD5 57 aa1.34□□□□□ -2.19
LIMS1-214ENST00000542845 K7ERU9 68 aa1.31□□□□□ -2.2
LIMS1-214ENST00000542845 ETDBQ3ZM63 59 aa1.31□□□□□ -2.2
LIMS1-214ENST00000542845 ATP5EP2Q5VTU8 51 aa1.3□□□□□ -2.2
LIMS1-214ENST00000542845 SERP1Q9Y6X1 66 aa1.3□□□□□ -2.2
LIMS1-214ENST00000542845 INE1O15225 51 aa1.29□□□□□ -2.2
LIMS1-214ENST00000542845 MUC19Q7Z5P9 8384 aa1.25□□□□□ -2.21
LIMS1-214ENST00000542845 GTF2H5Q6ZYL4 71 aa1.22□□□□□ -2.21
LIMS1-214ENST00000542845 LINC00643Q86TS7 51 aa1.22□□□□□ -2.21
LIMS1-214ENST00000542845 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
LIMS1-214ENST00000542845 SERP2Q8N6R1 65 aa1.2□□□□□ -2.22
LIMS1-214ENST00000542845 COL5A1-AS1Q5SY13 56 aa1.19□□□□□ -2.22
LIMS1-214ENST00000542845 SMIM6P0DI80 62 aa1.17□□□□□ -2.22
LIMS1-214ENST00000542845 A0A1B0GU69 56 aa1.14□□□□□ -2.23
LIMS1-214ENST00000542845 CCDC179H3BU77 68 aa1.12□□□□□ -2.23
LIMS1-214ENST00000542845 A0A1B0GV90 55 aa1.09□□□□□ -2.23
LIMS1-214ENST00000542845 H7BZZ5 65 aa1.09□□□□□ -2.23
LIMS1-214ENST00000542845 KRTAP21-2Q3LI59 83 aa1.07□□□□□ -2.24
LIMS1-214ENST00000542845 PRR15LQ9BU68 103 aa1.05□□□□□ -2.24
LIMS1-214ENST00000542845 UQCR11O14957 56 aa0.95□□□□□ -2.26
LIMS1-214ENST00000542845 LINC01558Q9Y6Z2 57 aa0.89□□□□□ -2.27
LIMS1-214ENST00000542845 KRTAP21-1Q3LI58 79 aa0.88□□□□□ -2.27
LIMS1-214ENST00000542845 ATP5EP56381 51 aaPredicted RBP0.85□□□□□ -2.27
LIMS1-214ENST00000542845 MUC16Q8WXI7 14507 aa0.65□□□□□ -2.31
LIMS1-214ENST00000542845 PRM1P04553 51 aa0.42□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 12.3 ms