RNA–Protein interactions for RNA: ENST00000542714.5

CHFR-221, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 4

Gene CHFR, Length 542 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-221ENST00000542714 SPRR2FQ96RM1 72 aa4.79□□□□□ -1.64
CHFR-221ENST00000542714 MACF1Q9UPN3 7388 aaKnown RBP4.75□□□□□ -1.65
CHFR-221ENST00000542714 MT1LQ93083 61 aa4.75□□□□□ -1.65
CHFR-221ENST00000542714 KRTAP6-3Q3LI67 103 aa4.74□□□□□ -1.65
CHFR-221ENST00000542714 KRTAP9-7A8MTY7 169 aa4.73□□□□□ -1.65
CHFR-221ENST00000542714 LCE1DQ5T752 114 aa4.73□□□□□ -1.65
CHFR-221ENST00000542714 KRTAP4-7Q9BYR0 210 aa4.7□□□□□ -1.66
CHFR-221ENST00000542714 KRTAP19-3Q7Z4W3 81 aa4.67□□□□□ -1.66
CHFR-221ENST00000542714 MUC12Q9UKN1 5478 aa4.66□□□□□ -1.66
CHFR-221ENST00000542714 LCE1AQ5T7P2 110 aa4.63□□□□□ -1.67
CHFR-221ENST00000542714 LCE3CQ5T5A8 94 aa4.61□□□□□ -1.67
CHFR-221ENST00000542714 LCE5AQ5TCM9 118 aa4.6□□□□□ -1.67
CHFR-221ENST00000542714 SYNE2Q8WXH0 6885 aaKnown RBP4.6□□□□□ -1.67
CHFR-221ENST00000542714 MT1GP13640 62 aa4.59□□□□□ -1.67
CHFR-221ENST00000542714 KRTAP4-9Q9BYQ8 210 aa4.59□□□□□ -1.67
CHFR-221ENST00000542714 SPRR2EP22531 72 aa4.58□□□□□ -1.68
CHFR-221ENST00000542714 SPRR2BP35325 72 aa4.58□□□□□ -1.68
CHFR-221ENST00000542714 SPRR2AP35326 72 aa4.58□□□□□ -1.68
CHFR-221ENST00000542714 KRTAP19-4Q3LI73 84 aa4.58□□□□□ -1.68
CHFR-221ENST00000542714 MT1MQ8N339 61 aa4.58□□□□□ -1.68
CHFR-221ENST00000542714 SPRR5A0A1B0GTR4 108 aa4.54□□□□□ -1.68
CHFR-221ENST00000542714 LCE4AQ5TA78 99 aa4.53□□□□□ -1.68
CHFR-221ENST00000542714 KRTAP4-3Q9BYR4 195 aa4.51□□□□□ -1.69
CHFR-221ENST00000542714 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
CHFR-221ENST00000542714 MDN1Q9NU22 5596 aa4.48□□□□□ -1.69
CHFR-221ENST00000542714 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
CHFR-221ENST00000542714 SPRR2DP22532 72 aa4.41□□□□□ -1.7
CHFR-221ENST00000542714 KRTAP9-6A8MVA2 160 aa4.4□□□□□ -1.71
CHFR-221ENST00000542714 H3BS24 57 aa4.4□□□□□ -1.71
CHFR-221ENST00000542714 NEBP20929 6669 aa4.3□□□□□ -1.72
CHFR-221ENST00000542714 LUZP6Q538Z0 58 aa4.22□□□□□ -1.73
CHFR-221ENST00000542714 KRTAP5-5Q701N2 237 aaPredicted RBP4.16□□□□□ -1.74
CHFR-221ENST00000542714 KRTAP2-3P0C7H8 128 aa4.15□□□□□ -1.75
CHFR-221ENST00000542714 KRTAP2-4Q9BYR9 128 aa4.15□□□□□ -1.75
CHFR-221ENST00000542714 NDUFAF8A1L188 74 aa4.11□□□□□ -1.75
CHFR-221ENST00000542714 KRTAP20-1Q3LI63 56 aa4.11□□□□□ -1.75
CHFR-221ENST00000542714 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
CHFR-221ENST00000542714 DSTQ03001 7570 aaKnown RBP4.07□□□□□ -1.76
CHFR-221ENST00000542714 KRTAP2-2Q9BYT5 123 aa4.05□□□□□ -1.76
CHFR-221ENST00000542714 KRTAP2-1Q9BYU5 128 aa4.05□□□□□ -1.76
CHFR-221ENST00000542714 MT1AP04731 61 aa4.03□□□□□ -1.76
CHFR-221ENST00000542714 KRTAP6-1Q3LI64 71 aa4.01□□□□□ -1.77
CHFR-221ENST00000542714 KRTAP5-4Q6L8H1 288 aa4.01□□□□□ -1.77
CHFR-221ENST00000542714 GPR98Q8WXG9 6306 aa3.97□□□□□ -1.77
CHFR-221ENST00000542714 MT4P47944 62 aa3.83□□□□□ -1.8
CHFR-221ENST00000542714 KRTAP12-4P60329 112 aa3.8□□□□□ -1.8
CHFR-221ENST00000542714 SYNE1Q8NF91 8797 aaKnown RBP3.75□□□□□ -1.81
CHFR-221ENST00000542714 KRTAP20-2Q3LI61 65 aa3.74□□□□□ -1.81
CHFR-221ENST00000542714 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
CHFR-221ENST00000542714 HMCN1Q96RW7 5635 aa3.65□□□□□ -1.83
CHFR-221ENST00000542714 MT3P25713 68 aa3.62□□□□□ -1.83
CHFR-221ENST00000542714 KRTAP5-2Q701N4 177 aa3.62□□□□□ -1.83
CHFR-221ENST00000542714 A0A0A0MQY5 61 aa3.53□□□□□ -1.84
CHFR-221ENST00000542714 LCE3DQ9BYE3 92 aa3.42□□□□□ -1.86
CHFR-221ENST00000542714 INE1O15225 51 aa3.37□□□□□ -1.87
CHFR-221ENST00000542714 AHNAK2Q8IVF2 5795 aa3.35□□□□□ -1.87
CHFR-221ENST00000542714 LCE3EQ5T5B0 92 aa3.32□□□□□ -1.88
CHFR-221ENST00000542714 KRTAP5-10Q6L8G5 202 aa3.23□□□□□ -1.89
CHFR-221ENST00000542714 KRTAP5-7Q6L8G8 165 aa3.22□□□□□ -1.89
CHFR-221ENST00000542714 OBSCNQ5VST9 7968 aa3.17□□□□□ -1.9
CHFR-221ENST00000542714 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
CHFR-221ENST00000542714 KRTAP5-8O75690 187 aa3.15□□□□□ -1.91
CHFR-221ENST00000542714 KRTAP5-1Q6L8H4 278 aa3.14□□□□□ -1.91
CHFR-221ENST00000542714 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
CHFR-221ENST00000542714 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.05□□□□□ -1.92
CHFR-221ENST00000542714 LCE1BQ5T7P3 118 aa2.97□□□□□ -1.93
CHFR-221ENST00000542714 MUC5ACP98088 5654 aa2.97□□□□□ -1.93
CHFR-221ENST00000542714 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
CHFR-221ENST00000542714 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
CHFR-221ENST00000542714 MUC5BQ9HC84 5762 aaPredicted RBP2.94□□□□□ -1.94
CHFR-221ENST00000542714 PRM1P04553 51 aa2.87□□□□□ -1.95
CHFR-221ENST00000542714 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
CHFR-221ENST00000542714 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2
CHFR-221ENST00000542714 LCE1FQ5T754 118 aa2.38□□□□□ -2.03
CHFR-221ENST00000542714 PHGR1C9JFL3 82 aa2.26□□□□□ -2.05
CHFR-221ENST00000542714 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
CHFR-221ENST00000542714 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
CHFR-221ENST00000542714 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 77 ms