RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 LINC01558Q9Y6Z2 57 aa7.34□□□□□ -1.23
CHFR-217ENST00000540537 LCE1DQ5T752 114 aa7.33□□□□□ -1.24
CHFR-217ENST00000540537 LCE4AQ5TA78 99 aa7.33□□□□□ -1.24
CHFR-217ENST00000540537 HMCN1Q96RW7 5635 aa7.27□□□□□ -1.25
CHFR-217ENST00000540537 KRTAP4-3Q9BYR4 195 aa7.25□□□□□ -1.25
CHFR-217ENST00000540537 MT4P47944 62 aa7.22□□□□□ -1.25
CHFR-217ENST00000540537 UQCR11O14957 56 aa7.18□□□□□ -1.26
CHFR-217ENST00000540537 KRTAP5-4Q6L8H1 288 aa7.17□□□□□ -1.26
CHFR-217ENST00000540537 KRTAP12-3P60328 96 aa7.16□□□□□ -1.26
CHFR-217ENST00000540537 AHNAK2Q8IVF2 5795 aa7.08□□□□□ -1.28
CHFR-217ENST00000540537 KRTAP4-7Q9BYR0 210 aa7.06□□□□□ -1.28
CHFR-217ENST00000540537 KRTAP4-6Q9BYQ5 205 aa7.01□□□□□ -1.29
CHFR-217ENST00000540537 MIR22HGQ0VDD5 57 aa7□□□□□ -1.29
CHFR-217ENST00000540537 KRTAP25-1Q3LHN0 102 aa7□□□□□ -1.29
CHFR-217ENST00000540537 RPS28P62857 69 aaKnown RBP6.97□□□□□ -1.29
CHFR-217ENST00000540537 V9GYY9 64 aa6.94□□□□□ -1.3
CHFR-217ENST00000540537 K7ERS5 55 aa6.91□□□□□ -1.3
CHFR-217ENST00000540537 Q1T7F1 81 aa6.89□□□□□ -1.31
CHFR-217ENST00000540537 KRTAP5-10Q6L8G5 202 aa6.87□□□□□ -1.31
CHFR-217ENST00000540537 KRTAP5-5Q701N2 237 aaPredicted RBP6.86□□□□□ -1.31
CHFR-217ENST00000540537 PSPHP1O15172 72 aa6.79□□□□□ -1.32
CHFR-217ENST00000540537 KRTAP19-4Q3LI73 84 aa6.79□□□□□ -1.32
CHFR-217ENST00000540537 KRTAP20-2Q3LI61 65 aa6.77□□□□□ -1.33
CHFR-217ENST00000540537 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
CHFR-217ENST00000540537 SPRR5A0A1B0GTR4 108 aa6.74□□□□□ -1.33
CHFR-217ENST00000540537 KRTAP12-4P60329 112 aa6.7□□□□□ -1.34
CHFR-217ENST00000540537 LOC100996750A0A140TA64 210 aa6.69□□□□□ -1.34
CHFR-217ENST00000540537 KRTAP5-3Q6L8H2 238 aa6.69□□□□□ -1.34
CHFR-217ENST00000540537 KRTAP15-1Q3LI76 137 aa6.66□□□□□ -1.34
CHFR-217ENST00000540537 A6NED7 52 aa6.62□□□□□ -1.35
CHFR-217ENST00000540537 KRTAP5-7Q6L8G8 165 aa6.62□□□□□ -1.35
CHFR-217ENST00000540537 SYNE1Q8NF91 8797 aaKnown RBP6.59□□□□□ -1.35
CHFR-217ENST00000540537 LCE3CQ5T5A8 94 aa6.58□□□□□ -1.36
CHFR-217ENST00000540537 CDC42SE1Q9NRR8 79 aa6.52□□□□□ -1.37
CHFR-217ENST00000540537 ROMO1P60602 79 aa6.41□□□□□ -1.38
CHFR-217ENST00000540537 MT1AP04731 61 aa6.36□□□□□ -1.39
CHFR-217ENST00000540537 KRTAP6-1Q3LI64 71 aa6.31□□□□□ -1.4
CHFR-217ENST00000540537 KRTAP5-2Q701N4 177 aa6.27□□□□□ -1.41
CHFR-217ENST00000540537 BRK1Q8WUW1 75 aa6.22□□□□□ -1.41
CHFR-217ENST00000540537 KRTAP9-6A8MVA2 160 aa6.2□□□□□ -1.42
CHFR-217ENST00000540537 KRTAP4-11Q9BYQ6 195 aa6.2□□□□□ -1.42
CHFR-217ENST00000540537 KRTAP9-4Q9BYQ2 154 aa6.14□□□□□ -1.43
CHFR-217ENST00000540537 KRTAP6-2Q3LI66 62 aa6.04□□□□□ -1.44
CHFR-217ENST00000540537 KRTAP5-8O75690 187 aa5.99□□□□□ -1.45
CHFR-217ENST00000540537 PMAIP1Q13794 54 aa5.88□□□□□ -1.47
CHFR-217ENST00000540537 PRO0628Q9UI54 55 aa5.85□□□□□ -1.47
CHFR-217ENST00000540537 AHNAKQ09666 5890 aaKnown RBP5.85□□□□□ -1.47
CHFR-217ENST00000540537 MUC5BQ9HC84 5762 aaPredicted RBP5.84□□□□□ -1.47
CHFR-217ENST00000540537 MT3P25713 68 aa5.82□□□□□ -1.48
CHFR-217ENST00000540537 OBSCNQ5VST9 7968 aa5.81□□□□□ -1.48
CHFR-217ENST00000540537 MUC5ACP98088 5654 aa5.78□□□□□ -1.48
CHFR-217ENST00000540537 KRTAP9-9Q9BYP9 154 aa5.71□□□□□ -1.5
CHFR-217ENST00000540537 KRTAP5-1Q6L8H4 278 aa5.64□□□□□ -1.51
CHFR-217ENST00000540537 PRAC1Q96KF2 57 aa5.51□□□□□ -1.53
CHFR-217ENST00000540537 KTN1-AS1Q86SY8 53 aa5.49□□□□□ -1.53
CHFR-217ENST00000540537 LCE1EQ5T753 118 aa5.37□□□□□ -1.55
CHFR-217ENST00000540537 SVIPQ8NHG7 77 aa5.22□□□□□ -1.57
CHFR-217ENST00000540537 KRTAP4-2Q9BYR5 136 aa5.08□□□□□ -1.6
CHFR-217ENST00000540537 LCE1BQ5T7P3 118 aa5.03□□□□□ -1.6
CHFR-217ENST00000540537 LCE1CQ5T751 118 aa4.99□□□□□ -1.61
CHFR-217ENST00000540537 LCE3DQ9BYE3 92 aa4.72□□□□□ -1.65
CHFR-217ENST00000540537 LUZP6Q538Z0 58 aa4.65□□□□□ -1.67
CHFR-217ENST00000540537 KRTAP4-12Q9BQ66 201 aa4.6□□□□□ -1.67
CHFR-217ENST00000540537 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.54□□□□□ -1.68
CHFR-217ENST00000540537 KRTAP5-11Q6L8G4 156 aa4.53□□□□□ -1.68
CHFR-217ENST00000540537 LCE3EQ5T5B0 92 aa4.43□□□□□ -1.7
CHFR-217ENST00000540537 LCE1FQ5T754 118 aa4.43□□□□□ -1.7
CHFR-217ENST00000540537 NDUFAF8A1L188 74 aa4.17□□□□□ -1.74
CHFR-217ENST00000540537 KRTAP21-2Q3LI59 83 aa4.16□□□□□ -1.74
CHFR-217ENST00000540537 PHGR1C9JFL3 82 aa3.99□□□□□ -1.77
CHFR-217ENST00000540537 KRTAP4-4Q9BYR3 166 aa3.8□□□□□ -1.8
CHFR-217ENST00000540537 A0A0A0MQY5 61 aa3.6□□□□□ -1.83
CHFR-217ENST00000540537 MUC19Q7Z5P9 8384 aa3.59□□□□□ -1.83
CHFR-217ENST00000540537 INE1O15225 51 aa3.46□□□□□ -1.86
CHFR-217ENST00000540537 H3BS24 57 aa3.32□□□□□ -1.88
CHFR-217ENST00000540537 PRM1P04553 51 aa3.25□□□□□ -1.89
CHFR-217ENST00000540537 KRTAP21-1Q3LI58 79 aa3.05□□□□□ -1.92
CHFR-217ENST00000540537 MUC16Q8WXI7 14507 aa2.6□□□□□ -1.99
Retrieved 78 of 20,778 RNA–protein pairs in 66.7 ms