RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 LOC100996750A0A140TA64 210 aa2.59□□□□□ -2
YBX3-208ENST00000540447 LCE2BO14633 110 aa2.58□□□□□ -2
YBX3-208ENST00000540447 TNXBP22105 4242 aa2.56□□□□□ -2
YBX3-208ENST00000540447 MUC17Q685J3 4493 aa2.56□□□□□ -2
YBX3-208ENST00000540447 KRTAP4-9Q9BYQ8 210 aa2.54□□□□□ -2
YBX3-208ENST00000540447 KRTAP9-3Q9BYQ3 159 aa2.53□□□□□ -2
YBX3-208ENST00000540447 FAT4Q6V0I7 4981 aa2.52□□□□□ -2.01
YBX3-208ENST00000540447 MT1MQ8N339 61 aa2.51□□□□□ -2.01
YBX3-208ENST00000540447 SYNE1Q8NF91 8797 aaKnown RBP2.49□□□□□ -2.01
YBX3-208ENST00000540447 KRTAP6-2Q3LI66 62 aa2.48□□□□□ -2.01
YBX3-208ENST00000540447 KRTAP4-3Q9BYR4 195 aa2.48□□□□□ -2.01
YBX3-208ENST00000540447 LCE2CQ5TA81 110 aa2.47□□□□□ -2.01
YBX3-208ENST00000540447 KRTAP9-2Q9BYQ4 174 aa2.47□□□□□ -2.01
YBX3-208ENST00000540447 MT1AP04731 61 aa2.45□□□□□ -2.02
YBX3-208ENST00000540447 KRTAP9-7A8MTY7 169 aa2.45□□□□□ -2.02
YBX3-208ENST00000540447 MT4P47944 62 aa2.42□□□□□ -2.02
YBX3-208ENST00000540447 KRTAP9-6A8MVA2 160 aa2.42□□□□□ -2.02
YBX3-208ENST00000540447 LCE1BQ5T7P3 118 aa2.42□□□□□ -2.02
YBX3-208ENST00000540447 LCE2AQ5TA79 106 aaPredicted RBP2.42□□□□□ -2.02
YBX3-208ENST00000540447 HMCN2Q8NDA2 5059 aa2.41□□□□□ -2.02
YBX3-208ENST00000540447 LCE1DQ5T752 114 aa2.39□□□□□ -2.03
YBX3-208ENST00000540447 KRTAP19-2Q3LHN2 52 aa2.38□□□□□ -2.03
YBX3-208ENST00000540447 FLGP20930 4061 aaPredicted RBP2.38□□□□□ -2.03
YBX3-208ENST00000540447 KRTAP9-6A0A140TA67 174 aa2.38□□□□□ -2.03
YBX3-208ENST00000540447 KRTAP19-7Q3SYF9 63 aa2.38□□□□□ -2.03
YBX3-208ENST00000540447 KRTAP2-2Q9BYT5 123 aa2.35□□□□□ -2.03
YBX3-208ENST00000540447 LCE1AQ5T7P2 110 aa2.31□□□□□ -2.04
YBX3-208ENST00000540447 USH2AO75445 5202 aa2.31□□□□□ -2.04
YBX3-208ENST00000540447 KRTAP20-1Q3LI63 56 aa2.27□□□□□ -2.05
YBX3-208ENST00000540447 KRTAP6-1Q3LI64 71 aa2.25□□□□□ -2.05
YBX3-208ENST00000540447 OBSCNQ5VST9 7968 aa2.22□□□□□ -2.05
YBX3-208ENST00000540447 LCE1EQ5T753 118 aa2.2□□□□□ -2.06
YBX3-208ENST00000540447 KRTAP19-6Q3LI70 58 aa2.2□□□□□ -2.06
YBX3-208ENST00000540447 LCE5AQ5TCM9 118 aa2.19□□□□□ -2.06
YBX3-208ENST00000540447 KRTAP9-4Q9BYQ2 154 aa2.18□□□□□ -2.06
YBX3-208ENST00000540447 LCE4AQ5TA78 99 aa2.14□□□□□ -2.07
YBX3-208ENST00000540447 KMT2DO14686 5537 aa2.12□□□□□ -2.07
YBX3-208ENST00000540447 KRTAP4-11Q9BYQ6 195 aa2.12□□□□□ -2.07
YBX3-208ENST00000540447 KRTAP6-3Q3LI67 103 aa2.09□□□□□ -2.07
YBX3-208ENST00000540447 DSTQ03001 7570 aaKnown RBP2.09□□□□□ -2.08
YBX3-208ENST00000540447 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.07□□□□□ -2.08
YBX3-208ENST00000540447 SYNE2Q8WXH0 6885 aaKnown RBP2.07□□□□□ -2.08
YBX3-208ENST00000540447 SSPOA2VEC9 5147 aa2.06□□□□□ -2.08
YBX3-208ENST00000540447 LCE1CQ5T751 118 aa2□□□□□ -2.09
YBX3-208ENST00000540447 LCE1FQ5T754 118 aa2□□□□□ -2.09
YBX3-208ENST00000540447 FCGBPQ9Y6R7 5405 aaPredicted RBP2□□□□□ -2.09
YBX3-208ENST00000540447 MACF1Q9UPN3 7388 aaKnown RBP1.99□□□□□ -2.09
YBX3-208ENST00000540447 MUC12Q9UKN1 5478 aa1.98□□□□□ -2.09
YBX3-208ENST00000540447 KRTAP5-5Q701N2 237 aaPredicted RBP1.93□□□□□ -2.1
YBX3-208ENST00000540447 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
YBX3-208ENST00000540447 GPR98Q8WXG9 6306 aa1.84□□□□□ -2.11
YBX3-208ENST00000540447 MDN1Q9NU22 5596 aa1.84□□□□□ -2.11
YBX3-208ENST00000540447 KRTAP9-9Q9BYP9 154 aa1.81□□□□□ -2.12
YBX3-208ENST00000540447 KRTAP4-6Q9BYQ5 205 aa1.8□□□□□ -2.12
YBX3-208ENST00000540447 KRTAP4-12Q9BQ66 201 aa1.76□□□□□ -2.13
YBX3-208ENST00000540447 KRTAP4-4Q9BYR3 166 aa1.72□□□□□ -2.13
YBX3-208ENST00000540447 KRTAP20-2Q3LI61 65 aa1.7□□□□□ -2.14
YBX3-208ENST00000540447 KRTAP5-9P26371 169 aa1.69□□□□□ -2.14
YBX3-208ENST00000540447 NEBP20929 6669 aa1.67□□□□□ -2.14
YBX3-208ENST00000540447 AHNAK2Q8IVF2 5795 aa1.63□□□□□ -2.15
YBX3-208ENST00000540447 KRTAP4-2Q9BYR5 136 aa1.61□□□□□ -2.15
YBX3-208ENST00000540447 HMCN1Q96RW7 5635 aa1.52□□□□□ -2.17
YBX3-208ENST00000540447 KRTAP5-4Q6L8H1 288 aa1.46□□□□□ -2.18
YBX3-208ENST00000540447 KRTAP5-10Q6L8G5 202 aa1.42□□□□□ -2.18
YBX3-208ENST00000540447 KRTAP5-2Q701N4 177 aa1.41□□□□□ -2.18
YBX3-208ENST00000540447 AHNAKQ09666 5890 aaKnown RBP1.39□□□□□ -2.19
YBX3-208ENST00000540447 MUC5ACP98088 5654 aa1.38□□□□□ -2.19
YBX3-208ENST00000540447 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.38□□□□□ -2.19
YBX3-208ENST00000540447 KRTAP5-3Q6L8H2 238 aa1.35□□□□□ -2.19
YBX3-208ENST00000540447 KRTAP21-1Q3LI58 79 aa1.31□□□□□ -2.2
YBX3-208ENST00000540447 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
YBX3-208ENST00000540447 KRTAP5-8O75690 187 aa1.23□□□□□ -2.21
YBX3-208ENST00000540447 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
YBX3-208ENST00000540447 KRTAP5-1Q6L8H4 278 aa1.17□□□□□ -2.22
YBX3-208ENST00000540447 KRTAP5-7Q6L8G8 165 aa1.15□□□□□ -2.23
YBX3-208ENST00000540447 KRTAP21-2Q3LI59 83 aa1.08□□□□□ -2.24
YBX3-208ENST00000540447 KRTAP5-11Q6L8G4 156 aa1.07□□□□□ -2.24
YBX3-208ENST00000540447 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 244.5 ms