RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SMIM31A0A1B0GVY4 71 aa-1.06□□□□□ -2.58
VPS13A-213ENST00000539950 CMC2Q9NRP2 79 aa-1.06□□□□□ -2.58
VPS13A-213ENST00000539950 CLTCL1P53675 1640 aa-1.07□□□□□ -2.58
VPS13A-213ENST00000539950 PCNTO95613 3336 aa-1.07□□□□□ -2.58
VPS13A-213ENST00000539950 RPS29P62273 56 aaKnown RBP-1.07□□□□□ -2.58
VPS13A-213ENST00000539950 KRTAP20-1Q3LI63 56 aa-1.07□□□□□ -2.58
VPS13A-213ENST00000539950 WDFY3Q8IZQ1 3526 aa-1.07□□□□□ -2.58
VPS13A-213ENST00000539950 BOD1L1Q8NFC6 3051 aa-1.07□□□□□ -2.58
VPS13A-213ENST00000539950 DDX60Q8IY21 1712 aaKnown RBP-1.09□□□□□ -2.58
VPS13A-213ENST00000539950 SZT2Q5T011 3432 aa-1.1□□□□□ -2.59
VPS13A-213ENST00000539950 MT1FP04733 61 aa-1.1□□□□□ -2.59
VPS13A-213ENST00000539950 NDUFA1O15239 70 aa-1.11□□□□□ -2.59
VPS13A-213ENST00000539950 ERICH3Q5RHP9 1530 aa-1.12□□□□□ -2.59
VPS13A-213ENST00000539950 CEP250Q9BV73 2442 aa-1.14□□□□□ -2.59
VPS13A-213ENST00000539950 WDFY4Q6ZS81 3184 aa-1.14□□□□□ -2.59
VPS13A-213ENST00000539950 SPEGQ15772 3267 aa-1.14□□□□□ -2.59
VPS13A-213ENST00000539950 CEP350Q5VT06 3117 aa-1.15□□□□□ -2.59
VPS13A-213ENST00000539950 DMDP11532 3685 aa-1.18□□□□□ -2.6
VPS13A-213ENST00000539950 MUC3AQ02505 3323 aa-1.18□□□□□ -2.6
VPS13A-213ENST00000539950 EP400Q96L91 3159 aa-1.2□□□□□ -2.6
VPS13A-213ENST00000539950 SNRPGP15A8MWD9 76 aa-1.23□□□□□ -2.61
VPS13A-213ENST00000539950 LINC01590Q5TEZ4 76 aa-1.23□□□□□ -2.61
VPS13A-213ENST00000539950 SAMD9LQ8IVG5 1584 aa-1.23□□□□□ -2.61
VPS13A-213ENST00000539950 DCHS1Q96JQ0 3298 aa-1.24□□□□□ -2.61
VPS13A-213ENST00000539950 TOMM7Q9P0U1 55 aa-1.26□□□□□ -2.61
VPS13A-213ENST00000539950 DNAH12Q6ZR08 3092 aa-1.26□□□□□ -2.61
VPS13A-213ENST00000539950 DUOX1Q9NRD9 1551 aa-1.26□□□□□ -2.61
VPS13A-213ENST00000539950 XIRP2A4UGR9 3374 aa-1.27□□□□□ -2.61
VPS13A-213ENST00000539950 MKI67P46013 3256 aaKnown RBP-1.28□□□□□ -2.61
VPS13A-213ENST00000539950 ATP7AQ04656 1500 aa-1.28□□□□□ -2.61
VPS13A-213ENST00000539950 RHPN1-AS1Q9BWJ2 59 aa-1.28□□□□□ -2.61
VPS13A-213ENST00000539950 IQGAP2Q13576 1575 aa-1.29□□□□□ -2.62
VPS13A-213ENST00000539950 CENPEQ02224 2701 aa-1.29□□□□□ -2.62
VPS13A-213ENST00000539950 KRTAP19-6Q3LI70 58 aa-1.3□□□□□ -2.62
VPS13A-213ENST00000539950 RPL39P62891 51 aaKnown RBP-1.32□□□□□ -2.62
VPS13A-213ENST00000539950 DEFB133Q30KQ1 61 aa-1.33□□□□□ -2.62
VPS13A-213ENST00000539950 LOC400499M0QZD8 3231 aa-1.33□□□□□ -2.62
VPS13A-213ENST00000539950 TOP2AP11388 1531 aaKnown RBP-1.35□□□□□ -2.62
VPS13A-213ENST00000539950 CFAP47Q6ZTR5 3102 aa-1.36□□□□□ -2.63
VPS13A-213ENST00000539950 MROH2BQ7Z745 1585 aa-1.36□□□□□ -2.63
VPS13A-213ENST00000539950 DEFB124Q8NES8 71 aa-1.36□□□□□ -2.63
VPS13A-213ENST00000539950 USP34Q70CQ2 3546 aa-1.36□□□□□ -2.63
VPS13A-213ENST00000539950 KRTAP19-2Q3LHN2 52 aa-1.37□□□□□ -2.63
VPS13A-213ENST00000539950 UNC80Q8N2C7 3258 aa-1.37□□□□□ -2.63
VPS13A-213ENST00000539950 TOMM5Q8N4H5 51 aa-1.39□□□□□ -2.63
VPS13A-213ENST00000539950 RPL39LQ96EH5 51 aaKnown RBP-1.39□□□□□ -2.63
VPS13A-213ENST00000539950 TTTY10Q9BZA0 68 aa-1.39□□□□□ -2.63
VPS13A-213ENST00000539950 DNAH14Q0VDD8 3507 aa-1.39□□□□□ -2.63
VPS13A-213ENST00000539950 A0A096LNI7 61 aa-1.4□□□□□ -2.63
VPS13A-213ENST00000539950 ASPMQ8IZT6 3477 aa-1.41□□□□□ -2.63
VPS13A-213ENST00000539950 HTN1P15515 57 aa-1.41□□□□□ -2.64
VPS13A-213ENST00000539950 CD52P31358 61 aa-1.41□□□□□ -2.64
VPS13A-213ENST00000539950 BRCA2P51587 3418 aa-1.44□□□□□ -2.64
VPS13A-213ENST00000539950 VCANP13611 3396 aa-1.5□□□□□ -2.65
VPS13A-213ENST00000539950 H3BUX3 64 aa-1.5□□□□□ -2.65
VPS13A-213ENST00000539950 CENPFP49454 3210 aa-1.53□□□□□ -2.65
VPS13A-213ENST00000539950 DEFB104AQ8WTQ1 72 aa-1.53□□□□□ -2.65
VPS13A-213ENST00000539950 CDH23Q9H251 3354 aa-1.55□□□□□ -2.66
VPS13A-213ENST00000539950 K7EIM0 57 aa-1.56□□□□□ -2.66
VPS13A-213ENST00000539950 VPS13AQ96RL7 3174 aa-1.58□□□□□ -2.66
VPS13A-213ENST00000539950 LINC01556Q5JQF7 62 aa-1.61□□□□□ -2.67
VPS13A-213ENST00000539950 GCC2Q8IWJ2 1684 aa-1.64□□□□□ -2.67
VPS13A-213ENST00000539950 SNRPGP62308 76 aaKnown RBP-1.66□□□□□ -2.68
VPS13A-213ENST00000539950 PRCDQ00LT1 54 aa-1.67□□□□□ -2.68
VPS13A-213ENST00000539950 ARHGAP5-AS1Q96IT6 56 aa-1.67□□□□□ -2.68
VPS13A-213ENST00000539950 UTRNP46939 3433 aa-1.76□□□□□ -2.69
VPS13A-213ENST00000539950 A0A096LPF7 62 aa-1.76□□□□□ -2.69
VPS13A-213ENST00000539950 TMEM167AQ8TBQ9 72 aa-1.76□□□□□ -2.69
VPS13A-213ENST00000539950 APELAP0DMC3 54 aa-1.81□□□□□ -2.7
VPS13A-213ENST00000539950 RPL39P5Q59GN2 51 aa-1.87□□□□□ -2.71
VPS13A-213ENST00000539950 Q9Y3F1 56 aa-1.9□□□□□ -2.71
VPS13A-213ENST00000539950 GOLGB1Q14789 3259 aaKnown RBP-1.91□□□□□ -2.71
VPS13A-213ENST00000539950 DEFB108AA8MXU0 73 aa-1.94□□□□□ -2.72
VPS13A-213ENST00000539950 H3BSH0 61 aa-1.94□□□□□ -2.72
VPS13A-213ENST00000539950 HTN3P15516 51 aa-1.95□□□□□ -2.72
VPS13A-213ENST00000539950 COX14Q96I36 57 aa-2.09□□□□□ -2.74
VPS13A-213ENST00000539950 DEFB108BQ8NET1 73 aa-2.19□□□□□ -2.76
VPS13A-213ENST00000539950 STATHP02808 62 aa-2.48□□□□□ -2.81
Retrieved 78 of 20,778 RNA–protein pairs in 166 ms