RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ADM2Q7Z4H4 148 aa3.71□□□□□ -1.82
USP28-205ENST00000537706 KRTAP13-4Q3LI77 160 aa3.69□□□□□ -1.82
USP28-205ENST00000537706 K7ERS5 55 aa3.67□□□□□ -1.82
USP28-205ENST00000537706 KRTAP5-3Q6L8H2 238 aa3.67□□□□□ -1.82
USP28-205ENST00000537706 M0QZ58 72 aa3.64□□□□□ -1.83
USP28-205ENST00000537706 A0A0D9SG42 100 aa3.62□□□□□ -1.83
USP28-205ENST00000537706 KRTAP10-12P60413 245 aa3.6□□□□□ -1.83
USP28-205ENST00000537706 KRTAP10-7P60409 375 aaPredicted RBP3.59□□□□□ -1.83
USP28-205ENST00000537706 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.83
USP28-205ENST00000537706 PRAC1Q96KF2 57 aa3.59□□□□□ -1.83
USP28-205ENST00000537706 KRTAP12-1P59990 96 aa3.56□□□□□ -1.84
USP28-205ENST00000537706 R4GN34 69 aa3.56□□□□□ -1.84
USP28-205ENST00000537706 ROMO1P60602 79 aa3.54□□□□□ -1.84
USP28-205ENST00000537706 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
USP28-205ENST00000537706 SPINT4Q6UDR6 99 aa3.52□□□□□ -1.85
USP28-205ENST00000537706 LINC01554Q52M75 96 aa3.49□□□□□ -1.85
USP28-205ENST00000537706 H3BS24 57 aa3.48□□□□□ -1.85
USP28-205ENST00000537706 KRTAP25-1Q3LHN0 102 aa3.48□□□□□ -1.85
USP28-205ENST00000537706 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.85
USP28-205ENST00000537706 AHNAKQ09666 5890 aaKnown RBP3.45□□□□□ -1.86
USP28-205ENST00000537706 KRTAP4-7Q9BYR0 210 aa3.45□□□□□ -1.86
USP28-205ENST00000537706 PP632Q6XCG6 107 aa3.44□□□□□ -1.86
USP28-205ENST00000537706 MT1EP04732 61 aa3.4□□□□□ -1.86
USP28-205ENST00000537706 MT1GP13640 62 aa3.4□□□□□ -1.87
USP28-205ENST00000537706 MUC5BQ9HC84 5762 aaPredicted RBP3.37□□□□□ -1.87
USP28-205ENST00000537706 KRTAP19-7Q3SYF9 63 aa3.36□□□□□ -1.87
USP28-205ENST00000537706 CAMK2N1Q7Z7J9 78 aa3.36□□□□□ -1.87
USP28-205ENST00000537706 C10orf95Q9H7T3 257 aa3.36□□□□□ -1.87
USP28-205ENST00000537706 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
USP28-205ENST00000537706 A0A0A0MQY5 61 aa3.31□□□□□ -1.88
USP28-205ENST00000537706 MT1MQ8N339 61 aa3.29□□□□□ -1.88
USP28-205ENST00000537706 KRTAP4-2Q9BYR5 136 aa3.25□□□□□ -1.89
USP28-205ENST00000537706 MUC5ACP98088 5654 aa3.24□□□□□ -1.89
USP28-205ENST00000537706 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
USP28-205ENST00000537706 KRTAP9-4Q9BYQ2 154 aa3.24□□□□□ -1.89
USP28-205ENST00000537706 KRTAP12-4P60329 112 aa3.23□□□□□ -1.89
USP28-205ENST00000537706 TNP1P09430 55 aa3.23□□□□□ -1.89
USP28-205ENST00000537706 KRTAP23-1A1A580 65 aa3.2□□□□□ -1.9
USP28-205ENST00000537706 KRTAP4-11Q9BYQ6 195 aa3.2□□□□□ -1.9
USP28-205ENST00000537706 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
USP28-205ENST00000537706 KRTAP19-5Q3LI72 72 aa3.17□□□□□ -1.9
USP28-205ENST00000537706 MT1LQ93083 61 aa3.16□□□□□ -1.9
USP28-205ENST00000537706 KRTAP5-8O75690 187 aa3.13□□□□□ -1.91
USP28-205ENST00000537706 KRTAP15-1Q3LI76 137 aa3.12□□□□□ -1.91
USP28-205ENST00000537706 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
USP28-205ENST00000537706 LCE3AQ5TA76 89 aa3.06□□□□□ -1.92
USP28-205ENST00000537706 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
USP28-205ENST00000537706 SYNE1Q8NF91 8797 aaKnown RBP2.94□□□□□ -1.94
USP28-205ENST00000537706 NDUFAF8A1L188 74 aa2.94□□□□□ -1.94
USP28-205ENST00000537706 KRTAP12-3P60328 96 aa2.94□□□□□ -1.94
USP28-205ENST00000537706 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
USP28-205ENST00000537706 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
USP28-205ENST00000537706 KRTAP19-4Q3LI73 84 aa2.82□□□□□ -1.96
USP28-205ENST00000537706 LCE3CQ5T5A8 94 aa2.76□□□□□ -1.97
USP28-205ENST00000537706 KRTAP5-1Q6L8H4 278 aa2.72□□□□□ -1.97
USP28-205ENST00000537706 MT1AP04731 61 aa2.7□□□□□ -1.98
USP28-205ENST00000537706 KRTAP6-2Q3LI66 62 aa2.7□□□□□ -1.98
USP28-205ENST00000537706 KRTAP6-1Q3LI64 71 aa2.68□□□□□ -1.98
USP28-205ENST00000537706 OBSCNQ5VST9 7968 aa2.66□□□□□ -1.98
USP28-205ENST00000537706 KRTAP9-6A8MVA2 160 aa2.61□□□□□ -1.99
USP28-205ENST00000537706 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.56□□□□□ -2
USP28-205ENST00000537706 MT3P25713 68 aa2.54□□□□□ -2
USP28-205ENST00000537706 INE1O15225 51 aa2.44□□□□□ -2.02
USP28-205ENST00000537706 LCE1EQ5T753 118 aa2.44□□□□□ -2.02
USP28-205ENST00000537706 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
USP28-205ENST00000537706 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
USP28-205ENST00000537706 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
USP28-205ENST00000537706 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
USP28-205ENST00000537706 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
USP28-205ENST00000537706 LCE3DQ9BYE3 92 aa2.09□□□□□ -2.08
USP28-205ENST00000537706 LCE3EQ5T5B0 92 aa2.05□□□□□ -2.08
USP28-205ENST00000537706 KRTAP4-4Q9BYR3 166 aa2.03□□□□□ -2.08
USP28-205ENST00000537706 PRM1P04553 51 aa1.86□□□□□ -2.11
USP28-205ENST00000537706 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
USP28-205ENST00000537706 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
USP28-205ENST00000537706 MUC19Q7Z5P9 8384 aa1.7□□□□□ -2.14
USP28-205ENST00000537706 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 8.4 ms