RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SERP1Q9Y6X1 66 aa3.02□□□□□ -1.93
USP28-203ENST00000537490 KRTAP12-1P59990 96 aa3.01□□□□□ -1.93
USP28-203ENST00000537490 SEC61GP60059 68 aa3.01□□□□□ -1.93
USP28-203ENST00000537490 PP632Q6XCG6 107 aa3.01□□□□□ -1.93
USP28-203ENST00000537490 A0A1B0GU33 70 aa3□□□□□ -1.93
USP28-203ENST00000537490 MT1LQ93083 61 aa3□□□□□ -1.93
USP28-203ENST00000537490 KRTAP4-3Q9BYR4 195 aa2.98□□□□□ -1.93
USP28-203ENST00000537490 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
USP28-203ENST00000537490 LCE3AQ5TA76 89 aa2.94□□□□□ -1.94
USP28-203ENST00000537490 C10orf95Q9H7T3 257 aa2.94□□□□□ -1.94
USP28-203ENST00000537490 A8MU10 97 aa2.92□□□□□ -1.94
USP28-203ENST00000537490 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
USP28-203ENST00000537490 KRTAP5-10Q6L8G5 202 aa2.91□□□□□ -1.94
USP28-203ENST00000537490 HMCN1Q96RW7 5635 aa2.9□□□□□ -1.94
USP28-203ENST00000537490 SMIM26A0A096LP01 95 aa2.9□□□□□ -1.95
USP28-203ENST00000537490 H7BZZ5 65 aa2.89□□□□□ -1.95
USP28-203ENST00000537490 TNP1P09430 55 aa2.89□□□□□ -1.95
USP28-203ENST00000537490 COX7CP15954 63 aa2.89□□□□□ -1.95
USP28-203ENST00000537490 A0A1B0GU69 56 aa2.88□□□□□ -1.95
USP28-203ENST00000537490 MT3P25713 68 aa2.87□□□□□ -1.95
USP28-203ENST00000537490 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
USP28-203ENST00000537490 KRTAP12-3P60328 96 aa2.82□□□□□ -1.96
USP28-203ENST00000537490 KRTAP5-7Q6L8G8 165 aa2.8□□□□□ -1.96
USP28-203ENST00000537490 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
USP28-203ENST00000537490 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
USP28-203ENST00000537490 SPRR5A0A1B0GTR4 108 aa2.75□□□□□ -1.97
USP28-203ENST00000537490 LCE1EQ5T753 118 aa2.75□□□□□ -1.97
USP28-203ENST00000537490 PRR15LQ9BU68 103 aa2.73□□□□□ -1.97
USP28-203ENST00000537490 KRTAP12-4P60329 112 aa2.72□□□□□ -1.97
USP28-203ENST00000537490 LINC01558Q9Y6Z2 57 aa2.71□□□□□ -1.98
USP28-203ENST00000537490 ANAPC13Q9BS18 74 aa2.7□□□□□ -1.98
USP28-203ENST00000537490 CCDC179H3BU77 68 aa2.68□□□□□ -1.98
USP28-203ENST00000537490 SYNE1Q8NF91 8797 aaKnown RBP2.67□□□□□ -1.98
USP28-203ENST00000537490 KRTAP25-1Q3LHN0 102 aa2.66□□□□□ -1.98
USP28-203ENST00000537490 UQCR11O14957 56 aa2.65□□□□□ -1.99
USP28-203ENST00000537490 ATP5EP56381 51 aaPredicted RBP2.64□□□□□ -1.99
USP28-203ENST00000537490 MIR22HGQ0VDD5 57 aa2.59□□□□□ -1.99
USP28-203ENST00000537490 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
USP28-203ENST00000537490 LCE3CQ5T5A8 94 aa2.58□□□□□ -2
USP28-203ENST00000537490 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
USP28-203ENST00000537490 MT1AP04731 61 aa2.55□□□□□ -2
USP28-203ENST00000537490 KRTAP6-1Q3LI64 71 aa2.55□□□□□ -2
USP28-203ENST00000537490 K7ERS5 55 aa2.54□□□□□ -2
USP28-203ENST00000537490 TMEM258P61165 79 aa2.53□□□□□ -2
USP28-203ENST00000537490 NDUFAF8A1L188 74 aa2.51□□□□□ -2.01
USP28-203ENST00000537490 LCE1FQ5T754 118 aa2.51□□□□□ -2.01
USP28-203ENST00000537490 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
USP28-203ENST00000537490 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
USP28-203ENST00000537490 PRAC1Q96KF2 57 aa2.49□□□□□ -2.01
USP28-203ENST00000537490 PSPHP1O15172 72 aa2.47□□□□□ -2.01
USP28-203ENST00000537490 KRTAP9-6A8MVA2 160 aa2.46□□□□□ -2.02
USP28-203ENST00000537490 KRTAP6-2Q3LI66 62 aa2.46□□□□□ -2.02
USP28-203ENST00000537490 Q1T7F1 81 aa2.42□□□□□ -2.02
USP28-203ENST00000537490 V9GYY9 64 aa2.42□□□□□ -2.02
USP28-203ENST00000537490 CDC42SE1Q9NRR8 79 aa2.4□□□□□ -2.03
USP28-203ENST00000537490 OBSCNQ5VST9 7968 aa2.39□□□□□ -2.03
USP28-203ENST00000537490 RPS28P62857 69 aaKnown RBP2.37□□□□□ -2.03
USP28-203ENST00000537490 MUC5ACP98088 5654 aa2.36□□□□□ -2.03
USP28-203ENST00000537490 A6NED7 52 aa2.36□□□□□ -2.03
USP28-203ENST00000537490 ROMO1P60602 79 aa2.36□□□□□ -2.03
USP28-203ENST00000537490 MUC5BQ9HC84 5762 aaPredicted RBP2.34□□□□□ -2.03
USP28-203ENST00000537490 AHNAKQ09666 5890 aaKnown RBP2.32□□□□□ -2.04
USP28-203ENST00000537490 LCE3EQ5T5B0 92 aa2.14□□□□□ -2.07
USP28-203ENST00000537490 PRO0628Q9UI54 55 aa2.12□□□□□ -2.07
USP28-203ENST00000537490 LCE1BQ5T7P3 118 aa2.07□□□□□ -2.08
USP28-203ENST00000537490 PMAIP1Q13794 54 aa2.03□□□□□ -2.08
USP28-203ENST00000537490 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
USP28-203ENST00000537490 KTN1-AS1Q86SY8 53 aa1.88□□□□□ -2.11
USP28-203ENST00000537490 BRK1Q8WUW1 75 aa1.86□□□□□ -2.11
USP28-203ENST00000537490 LCE3DQ9BYE3 92 aa1.83□□□□□ -2.12
USP28-203ENST00000537490 LUZP6Q538Z0 58 aa1.8□□□□□ -2.12
USP28-203ENST00000537490 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
USP28-203ENST00000537490 KRTAP21-2Q3LI59 83 aa1.68□□□□□ -2.14
USP28-203ENST00000537490 MUC19Q7Z5P9 8384 aa1.48□□□□□ -2.17
USP28-203ENST00000537490 INE1O15225 51 aa1.38□□□□□ -2.19
USP28-203ENST00000537490 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
USP28-203ENST00000537490 PRM1P04553 51 aa1.21□□□□□ -2.22
USP28-203ENST00000537490 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 116.6 ms