RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 PP632Q6XCG6 107 aa5.85□□□□□ -1.47
CLSTN3-204ENST00000535313 MIR22HGQ0VDD5 57 aa5.8□□□□□ -1.48
CLSTN3-204ENST00000535313 C10orf95Q9H7T3 257 aa5.78□□□□□ -1.48
CLSTN3-204ENST00000535313 MT1MQ8N339 61 aa5.75□□□□□ -1.49
CLSTN3-204ENST00000535313 MT1LQ93083 61 aa5.75□□□□□ -1.49
CLSTN3-204ENST00000535313 TNP1P09430 55 aa5.73□□□□□ -1.49
CLSTN3-204ENST00000535313 LCE1DQ5T752 114 aa5.72□□□□□ -1.49
CLSTN3-204ENST00000535313 LCE3AQ5TA76 89 aa5.7□□□□□ -1.5
CLSTN3-204ENST00000535313 LCE4AQ5TA78 99 aa5.7□□□□□ -1.5
CLSTN3-204ENST00000535313 A6NED7 52 aa5.67□□□□□ -1.5
CLSTN3-204ENST00000535313 HMCN1Q96RW7 5635 aa5.66□□□□□ -1.5
CLSTN3-204ENST00000535313 MT4P47944 62 aa5.66□□□□□ -1.5
CLSTN3-204ENST00000535313 KRTAP4-3Q9BYR4 195 aa5.61□□□□□ -1.51
CLSTN3-204ENST00000535313 KRTAP5-4Q6L8H1 288 aa5.54□□□□□ -1.52
CLSTN3-204ENST00000535313 CDC42SE1Q9NRR8 79 aa5.54□□□□□ -1.52
CLSTN3-204ENST00000535313 KRTAP12-3P60328 96 aa5.51□□□□□ -1.53
CLSTN3-204ENST00000535313 K7ERS5 55 aa5.5□□□□□ -1.53
CLSTN3-204ENST00000535313 AHNAK2Q8IVF2 5795 aa5.5□□□□□ -1.53
CLSTN3-204ENST00000535313 KRTAP4-6Q9BYQ5 205 aa5.46□□□□□ -1.54
CLSTN3-204ENST00000535313 KRTAP4-7Q9BYR0 210 aa5.45□□□□□ -1.54
CLSTN3-204ENST00000535313 KRTAP25-1Q3LHN0 102 aa5.41□□□□□ -1.54
CLSTN3-204ENST00000535313 KRTAP5-10Q6L8G5 202 aa5.37□□□□□ -1.55
CLSTN3-204ENST00000535313 ROMO1P60602 79 aa5.31□□□□□ -1.56
CLSTN3-204ENST00000535313 KRTAP5-5Q701N2 237 aaPredicted RBP5.27□□□□□ -1.57
CLSTN3-204ENST00000535313 KRTAP20-2Q3LI61 65 aa5.25□□□□□ -1.57
CLSTN3-204ENST00000535313 KRTAP23-1A1A580 65 aa5.24□□□□□ -1.57
CLSTN3-204ENST00000535313 BRK1Q8WUW1 75 aa5.24□□□□□ -1.57
CLSTN3-204ENST00000535313 KRTAP5-3Q6L8H2 238 aa5.23□□□□□ -1.57
CLSTN3-204ENST00000535313 SPRR5A0A1B0GTR4 108 aa5.22□□□□□ -1.57
CLSTN3-204ENST00000535313 KRTAP12-4P60329 112 aa5.22□□□□□ -1.57
CLSTN3-204ENST00000535313 KRTAP19-4Q3LI73 84 aa5.2□□□□□ -1.58
CLSTN3-204ENST00000535313 KRTAP5-7Q6L8G8 165 aa5.18□□□□□ -1.58
CLSTN3-204ENST00000535313 LOC100996750A0A140TA64 210 aa5.17□□□□□ -1.58
CLSTN3-204ENST00000535313 SYNE1Q8NF91 8797 aaKnown RBP5.15□□□□□ -1.58
CLSTN3-204ENST00000535313 KRTAP15-1Q3LI76 137 aa5.1□□□□□ -1.59
CLSTN3-204ENST00000535313 LCE3CQ5T5A8 94 aa5.05□□□□□ -1.6
CLSTN3-204ENST00000535313 PMAIP1Q13794 54 aa4.92□□□□□ -1.62
CLSTN3-204ENST00000535313 MT1AP04731 61 aa4.89□□□□□ -1.63
CLSTN3-204ENST00000535313 KRTAP6-1Q3LI64 71 aa4.86□□□□□ -1.63
CLSTN3-204ENST00000535313 PRO0628Q9UI54 55 aa4.86□□□□□ -1.63
CLSTN3-204ENST00000535313 KRTAP4-11Q9BYQ6 195 aa4.84□□□□□ -1.63
CLSTN3-204ENST00000535313 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
CLSTN3-204ENST00000535313 PRAC1Q96KF2 57 aa4.78□□□□□ -1.64
CLSTN3-204ENST00000535313 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
CLSTN3-204ENST00000535313 KRTAP9-4Q9BYQ2 154 aa4.75□□□□□ -1.65
CLSTN3-204ENST00000535313 KRTAP6-2Q3LI66 62 aa4.68□□□□□ -1.66
CLSTN3-204ENST00000535313 KRTAP5-8O75690 187 aa4.66□□□□□ -1.66
CLSTN3-204ENST00000535313 OBSCNQ5VST9 7968 aa4.62□□□□□ -1.67
CLSTN3-204ENST00000535313 KTN1-AS1Q86SY8 53 aa4.58□□□□□ -1.68
CLSTN3-204ENST00000535313 AHNAKQ09666 5890 aaKnown RBP4.57□□□□□ -1.68
CLSTN3-204ENST00000535313 MUC5BQ9HC84 5762 aaPredicted RBP4.55□□□□□ -1.68
CLSTN3-204ENST00000535313 MUC5ACP98088 5654 aa4.53□□□□□ -1.68
CLSTN3-204ENST00000535313 MT3P25713 68 aa4.5□□□□□ -1.69
CLSTN3-204ENST00000535313 KRTAP9-9Q9BYP9 154 aa4.48□□□□□ -1.69
CLSTN3-204ENST00000535313 KRTAP5-1Q6L8H4 278 aa4.36□□□□□ -1.71
CLSTN3-204ENST00000535313 SVIPQ8NHG7 77 aa4.28□□□□□ -1.72
CLSTN3-204ENST00000535313 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
CLSTN3-204ENST00000535313 KRTAP4-12Q9BQ66 201 aa4.06□□□□□ -1.76
CLSTN3-204ENST00000535313 LCE1BQ5T7P3 118 aa3.93□□□□□ -1.78
CLSTN3-204ENST00000535313 KRTAP4-2Q9BYR5 136 aa3.91□□□□□ -1.78
CLSTN3-204ENST00000535313 LCE1CQ5T751 118 aa3.85□□□□□ -1.79
CLSTN3-204ENST00000535313 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
CLSTN3-204ENST00000535313 LCE3DQ9BYE3 92 aa3.62□□□□□ -1.83
CLSTN3-204ENST00000535313 KRTAP5-11Q6L8G4 156 aa3.49□□□□□ -1.85
CLSTN3-204ENST00000535313 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.48□□□□□ -1.85
CLSTN3-204ENST00000535313 NDUFAF8A1L188 74 aa3.45□□□□□ -1.86
CLSTN3-204ENST00000535313 LCE1FQ5T754 118 aa3.44□□□□□ -1.86
CLSTN3-204ENST00000535313 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
CLSTN3-204ENST00000535313 H3BS24 57 aa3.22□□□□□ -1.89
CLSTN3-204ENST00000535313 KRTAP21-2Q3LI59 83 aa3.19□□□□□ -1.9
CLSTN3-204ENST00000535313 PHGR1C9JFL3 82 aa3.15□□□□□ -1.91
CLSTN3-204ENST00000535313 KRTAP4-4Q9BYR3 166 aa2.96□□□□□ -1.94
CLSTN3-204ENST00000535313 A0A0A0MQY5 61 aa2.95□□□□□ -1.94
CLSTN3-204ENST00000535313 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
CLSTN3-204ENST00000535313 INE1O15225 51 aa2.82□□□□□ -1.96
CLSTN3-204ENST00000535313 PRM1P04553 51 aa2.78□□□□□ -1.96
CLSTN3-204ENST00000535313 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
CLSTN3-204ENST00000535313 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 214.9 ms