RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 KRTAP8-1Q8IUC2 63 aa4.85□□□□□ -1.63
TRAPPC4-213ENST00000533149 CDC42SE1Q9NRR8 79 aa4.81□□□□□ -1.64
TRAPPC4-213ENST00000533149 BRK1Q8WUW1 75 aa4.77□□□□□ -1.65
TRAPPC4-213ENST00000533149 KRTAP12-1P59990 96 aa4.76□□□□□ -1.65
TRAPPC4-213ENST00000533149 SPINT4Q6UDR6 99 aa4.76□□□□□ -1.65
TRAPPC4-213ENST00000533149 PRO2289Q9P1D8 64 aa4.75□□□□□ -1.65
TRAPPC4-213ENST00000533149 KRTAP12-2P59991 146 aa4.73□□□□□ -1.65
TRAPPC4-213ENST00000533149 PLAC4Q8WY50 150 aa4.73□□□□□ -1.65
TRAPPC4-213ENST00000533149 KRTAP23-1A1A580 65 aa4.72□□□□□ -1.65
TRAPPC4-213ENST00000533149 K7ERS5 55 aa4.7□□□□□ -1.66
TRAPPC4-213ENST00000533149 MT1XP80297 61 aa4.65□□□□□ -1.67
TRAPPC4-213ENST00000533149 CAMK2N1Q7Z7J9 78 aa4.65□□□□□ -1.67
TRAPPC4-213ENST00000533149 PRO0628Q9UI54 55 aa4.61□□□□□ -1.67
TRAPPC4-213ENST00000533149 DSTQ03001 7570 aaKnown RBP4.59□□□□□ -1.67
TRAPPC4-213ENST00000533149 KRTAP15-1Q3LI76 137 aa4.57□□□□□ -1.68
TRAPPC4-213ENST00000533149 PMAIP1Q13794 54 aa4.53□□□□□ -1.68
TRAPPC4-213ENST00000533149 C10orf95Q9H7T3 257 aa4.53□□□□□ -1.68
TRAPPC4-213ENST00000533149 ROMO1P60602 79 aa4.48□□□□□ -1.69
TRAPPC4-213ENST00000533149 KRTAP10-7P60409 375 aaPredicted RBP4.42□□□□□ -1.7
TRAPPC4-213ENST00000533149 KRTAP10-12P60413 245 aa4.42□□□□□ -1.7
TRAPPC4-213ENST00000533149 KRTAP5-10Q6L8G5 202 aa4.42□□□□□ -1.7
TRAPPC4-213ENST00000533149 TNP1P09430 55 aa4.4□□□□□ -1.71
TRAPPC4-213ENST00000533149 KRTAP25-1Q3LHN0 102 aa4.38□□□□□ -1.71
TRAPPC4-213ENST00000533149 MT4P47944 62 aa4.34□□□□□ -1.71
TRAPPC4-213ENST00000533149 KRTAP5-7Q6L8G8 165 aa4.34□□□□□ -1.71
TRAPPC4-213ENST00000533149 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
TRAPPC4-213ENST00000533149 AHNAK2Q8IVF2 5795 aa4.29□□□□□ -1.72
TRAPPC4-213ENST00000533149 KTN1-AS1Q86SY8 53 aa4.27□□□□□ -1.73
TRAPPC4-213ENST00000533149 PRAC1Q96KF2 57 aa4.26□□□□□ -1.73
TRAPPC4-213ENST00000533149 KRTAP19-3Q7Z4W3 81 aa4.24□□□□□ -1.73
TRAPPC4-213ENST00000533149 LCE3AQ5TA76 89 aa4.23□□□□□ -1.73
TRAPPC4-213ENST00000533149 SPRR5A0A1B0GTR4 108 aa4.21□□□□□ -1.74
TRAPPC4-213ENST00000533149 PP632Q6XCG6 107 aa4.19□□□□□ -1.74
TRAPPC4-213ENST00000533149 MT1EP04732 61 aa4.16□□□□□ -1.74
TRAPPC4-213ENST00000533149 KRTAP19-7Q3SYF9 63 aa4.16□□□□□ -1.74
TRAPPC4-213ENST00000533149 KRTAP5-4Q6L8H1 288 aa4.13□□□□□ -1.75
TRAPPC4-213ENST00000533149 KRTAP19-5Q3LI72 72 aa4.11□□□□□ -1.75
TRAPPC4-213ENST00000533149 MT1GP13640 62 aa4.1□□□□□ -1.75
TRAPPC4-213ENST00000533149 KRTAP12-3P60328 96 aa4.07□□□□□ -1.76
TRAPPC4-213ENST00000533149 MT1MQ8N339 61 aa3.99□□□□□ -1.77
TRAPPC4-213ENST00000533149 KRTAP20-2Q3LI61 65 aa3.94□□□□□ -1.78
TRAPPC4-213ENST00000533149 MT1LQ93083 61 aa3.92□□□□□ -1.78
TRAPPC4-213ENST00000533149 KRTAP4-3Q9BYR4 195 aa3.9□□□□□ -1.79
TRAPPC4-213ENST00000533149 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.89□□□□□ -1.79
TRAPPC4-213ENST00000533149 KRTAP5-11Q6L8G4 156 aa3.82□□□□□ -1.8
TRAPPC4-213ENST00000533149 KRTAP12-4P60329 112 aa3.8□□□□□ -1.8
TRAPPC4-213ENST00000533149 LCE3CQ5T5A8 94 aa3.8□□□□□ -1.8
TRAPPC4-213ENST00000533149 A0A0A0MQY5 61 aa3.75□□□□□ -1.81
TRAPPC4-213ENST00000533149 AHNAKQ09666 5890 aaKnown RBP3.72□□□□□ -1.81
TRAPPC4-213ENST00000533149 KRTAP5-5Q701N2 237 aaPredicted RBP3.71□□□□□ -1.81
TRAPPC4-213ENST00000533149 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
TRAPPC4-213ENST00000533149 LCE1EQ5T753 118 aa3.65□□□□□ -1.83
TRAPPC4-213ENST00000533149 KRTAP5-8O75690 187 aa3.64□□□□□ -1.83
TRAPPC4-213ENST00000533149 MUC5BQ9HC84 5762 aaPredicted RBP3.59□□□□□ -1.84
TRAPPC4-213ENST00000533149 KRTAP9-6A8MVA2 160 aa3.58□□□□□ -1.84
TRAPPC4-213ENST00000533149 KRTAP5-2Q701N4 177 aa3.52□□□□□ -1.85
TRAPPC4-213ENST00000533149 MT3P25713 68 aa3.49□□□□□ -1.85
TRAPPC4-213ENST00000533149 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
TRAPPC4-213ENST00000533149 LUZP6Q538Z0 58 aa3.48□□□□□ -1.85
TRAPPC4-213ENST00000533149 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
TRAPPC4-213ENST00000533149 MT1AP04731 61 aa3.33□□□□□ -1.88
TRAPPC4-213ENST00000533149 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
TRAPPC4-213ENST00000533149 KRTAP6-1Q3LI64 71 aa3.3□□□□□ -1.88
TRAPPC4-213ENST00000533149 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
TRAPPC4-213ENST00000533149 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
TRAPPC4-213ENST00000533149 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
TRAPPC4-213ENST00000533149 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
TRAPPC4-213ENST00000533149 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
TRAPPC4-213ENST00000533149 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
TRAPPC4-213ENST00000533149 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
TRAPPC4-213ENST00000533149 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
TRAPPC4-213ENST00000533149 INE1O15225 51 aa2.72□□□□□ -1.97
TRAPPC4-213ENST00000533149 PHGR1C9JFL3 82 aa2.62□□□□□ -1.99
TRAPPC4-213ENST00000533149 PRM1P04553 51 aa2.33□□□□□ -2.04
TRAPPC4-213ENST00000533149 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
TRAPPC4-213ENST00000533149 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
TRAPPC4-213ENST00000533149 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
TRAPPC4-213ENST00000533149 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 86.4 ms