RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 MT1MQ8N339 61 aa4.63□□□□□ -1.67
CPSF1-204ENST00000529288 AHNAK2Q8IVF2 5795 aa4.63□□□□□ -1.67
CPSF1-204ENST00000529288 LCE4AQ5TA78 99 aa4.6□□□□□ -1.67
CPSF1-204ENST00000529288 MT1LQ93083 61 aa4.6□□□□□ -1.67
CPSF1-204ENST00000529288 C10orf95Q9H7T3 257 aa4.58□□□□□ -1.68
CPSF1-204ENST00000529288 LCE3AQ5TA76 89 aa4.57□□□□□ -1.68
CPSF1-204ENST00000529288 KRTAP4-3Q9BYR4 195 aa4.57□□□□□ -1.68
CPSF1-204ENST00000529288 TNP1P09430 55 aa4.55□□□□□ -1.68
CPSF1-204ENST00000529288 UQCR11O14957 56 aa4.52□□□□□ -1.69
CPSF1-204ENST00000529288 KRTAP5-10Q6L8G5 202 aa4.47□□□□□ -1.69
CPSF1-204ENST00000529288 Q1T7F1 81 aa4.46□□□□□ -1.7
CPSF1-204ENST00000529288 KRTAP4-6Q9BYQ5 205 aa4.45□□□□□ -1.7
CPSF1-204ENST00000529288 MIR22HGQ0VDD5 57 aa4.44□□□□□ -1.7
CPSF1-204ENST00000529288 KRTAP5-4Q6L8H1 288 aa4.44□□□□□ -1.7
CPSF1-204ENST00000529288 PSPHP1O15172 72 aa4.43□□□□□ -1.7
CPSF1-204ENST00000529288 KRTAP4-7Q9BYR0 210 aa4.42□□□□□ -1.7
CPSF1-204ENST00000529288 V9GYY9 64 aa4.42□□□□□ -1.7
CPSF1-204ENST00000529288 KRTAP12-3P60328 96 aa4.38□□□□□ -1.71
CPSF1-204ENST00000529288 KRTAP5-7Q6L8G8 165 aa4.38□□□□□ -1.71
CPSF1-204ENST00000529288 RPS28P62857 69 aaKnown RBP4.3□□□□□ -1.72
CPSF1-204ENST00000529288 KRTAP25-1Q3LHN0 102 aa4.28□□□□□ -1.72
CPSF1-204ENST00000529288 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
CPSF1-204ENST00000529288 K7ERS5 55 aa4.26□□□□□ -1.73
CPSF1-204ENST00000529288 KRTAP5-3Q6L8H2 238 aa4.26□□□□□ -1.73
CPSF1-204ENST00000529288 A6NED7 52 aa4.25□□□□□ -1.73
CPSF1-204ENST00000529288 KRTAP20-2Q3LI61 65 aa4.25□□□□□ -1.73
CPSF1-204ENST00000529288 KRTAP5-5Q701N2 237 aaPredicted RBP4.21□□□□□ -1.74
CPSF1-204ENST00000529288 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
CPSF1-204ENST00000529288 LOC100996750A0A140TA64 210 aa4.19□□□□□ -1.74
CPSF1-204ENST00000529288 KRTAP23-1A1A580 65 aa4.15□□□□□ -1.75
CPSF1-204ENST00000529288 SYNE1Q8NF91 8797 aaKnown RBP4.14□□□□□ -1.75
CPSF1-204ENST00000529288 CDC42SE1Q9NRR8 79 aa4.11□□□□□ -1.75
CPSF1-204ENST00000529288 AHNAKQ09666 5890 aaKnown RBP4.08□□□□□ -1.76
CPSF1-204ENST00000529288 ROMO1P60602 79 aa4.07□□□□□ -1.76
CPSF1-204ENST00000529288 KRTAP15-1Q3LI76 137 aa4.04□□□□□ -1.76
CPSF1-204ENST00000529288 KRTAP19-4Q3LI73 84 aa4.03□□□□□ -1.76
CPSF1-204ENST00000529288 LCE3CQ5T5A8 94 aa4.01□□□□□ -1.77
CPSF1-204ENST00000529288 MUC5ACP98088 5654 aa3.95□□□□□ -1.78
CPSF1-204ENST00000529288 MUC5BQ9HC84 5762 aaPredicted RBP3.92□□□□□ -1.78
CPSF1-204ENST00000529288 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
CPSF1-204ENST00000529288 MT1AP04731 61 aa3.91□□□□□ -1.78
CPSF1-204ENST00000529288 KRTAP4-11Q9BYQ6 195 aa3.91□□□□□ -1.78
CPSF1-204ENST00000529288 KRTAP5-2Q701N4 177 aa3.86□□□□□ -1.79
CPSF1-204ENST00000529288 PRO0628Q9UI54 55 aa3.84□□□□□ -1.79
CPSF1-204ENST00000529288 KRTAP9-6A8MVA2 160 aa3.81□□□□□ -1.8
CPSF1-204ENST00000529288 KRTAP9-4Q9BYQ2 154 aa3.81□□□□□ -1.8
CPSF1-204ENST00000529288 KRTAP6-2Q3LI66 62 aa3.78□□□□□ -1.8
CPSF1-204ENST00000529288 KRTAP5-8O75690 187 aa3.77□□□□□ -1.81
CPSF1-204ENST00000529288 BRK1Q8WUW1 75 aa3.75□□□□□ -1.81
CPSF1-204ENST00000529288 H3BS24 57 aa3.74□□□□□ -1.81
CPSF1-204ENST00000529288 OBSCNQ5VST9 7968 aa3.72□□□□□ -1.81
CPSF1-204ENST00000529288 KRTAP9-9Q9BYP9 154 aa3.65□□□□□ -1.83
CPSF1-204ENST00000529288 PMAIP1Q13794 54 aa3.64□□□□□ -1.83
CPSF1-204ENST00000529288 A0A0A0MQY5 61 aa3.63□□□□□ -1.83
CPSF1-204ENST00000529288 MT3P25713 68 aa3.6□□□□□ -1.83
CPSF1-204ENST00000529288 KRTAP5-1Q6L8H4 278 aa3.51□□□□□ -1.85
CPSF1-204ENST00000529288 KTN1-AS1Q86SY8 53 aa3.46□□□□□ -1.86
CPSF1-204ENST00000529288 PRAC1Q96KF2 57 aa3.44□□□□□ -1.86
CPSF1-204ENST00000529288 LCE1EQ5T753 118 aa3.29□□□□□ -1.88
CPSF1-204ENST00000529288 LCE1BQ5T7P3 118 aa3.22□□□□□ -1.89
CPSF1-204ENST00000529288 KRTAP4-2Q9BYR5 136 aa3.14□□□□□ -1.91
CPSF1-204ENST00000529288 LCE1CQ5T751 118 aa3.06□□□□□ -1.92
CPSF1-204ENST00000529288 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
CPSF1-204ENST00000529288 LUZP6Q538Z0 58 aa2.94□□□□□ -1.94
CPSF1-204ENST00000529288 LCE3DQ9BYE3 92 aa2.88□□□□□ -1.95
CPSF1-204ENST00000529288 NDUFAF8A1L188 74 aa2.81□□□□□ -1.96
CPSF1-204ENST00000529288 KRTAP5-11Q6L8G4 156 aa2.78□□□□□ -1.96
CPSF1-204ENST00000529288 LCE1FQ5T754 118 aa2.73□□□□□ -1.97
CPSF1-204ENST00000529288 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.73□□□□□ -1.97
CPSF1-204ENST00000529288 LCE3EQ5T5B0 92 aa2.7□□□□□ -1.98
CPSF1-204ENST00000529288 PHGR1C9JFL3 82 aa2.63□□□□□ -1.99
CPSF1-204ENST00000529288 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
CPSF1-204ENST00000529288 KRTAP4-4Q9BYR3 166 aa2.45□□□□□ -2.02
CPSF1-204ENST00000529288 INE1O15225 51 aa2.36□□□□□ -2.03
CPSF1-204ENST00000529288 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
CPSF1-204ENST00000529288 PRM1P04553 51 aa2.1□□□□□ -2.07
CPSF1-204ENST00000529288 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
CPSF1-204ENST00000529288 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 7.4 ms