RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 MIR22HGQ0VDD5 57 aa5.88□□□□□ -1.47
LSM1-205ENST00000523511 LCE3AQ5TA76 89 aa5.86□□□□□ -1.47
LSM1-205ENST00000523511 KRTAP9-9Q9BYP9 154 aa5.83□□□□□ -1.48
LSM1-205ENST00000523511 KRTAP9-4Q9BYQ2 154 aa5.83□□□□□ -1.48
LSM1-205ENST00000523511 DSTQ03001 7570 aaKnown RBP5.82□□□□□ -1.48
LSM1-205ENST00000523511 MT1LQ93083 61 aa5.78□□□□□ -1.48
LSM1-205ENST00000523511 Q1T7F1 81 aa5.76□□□□□ -1.49
LSM1-205ENST00000523511 PSPHP1O15172 72 aa5.75□□□□□ -1.49
LSM1-205ENST00000523511 MT1MQ8N339 61 aa5.74□□□□□ -1.49
LSM1-205ENST00000523511 KRTAP25-1Q3LHN0 102 aa5.73□□□□□ -1.49
LSM1-205ENST00000523511 KRTAP12-3P60328 96 aa5.7□□□□□ -1.5
LSM1-205ENST00000523511 KRTAP4-9Q9BYQ8 210 aa5.63□□□□□ -1.51
LSM1-205ENST00000523511 A6NED7 52 aa5.62□□□□□ -1.51
LSM1-205ENST00000523511 LCE4AQ5TA78 99 aa5.61□□□□□ -1.51
LSM1-205ENST00000523511 KRTAP4-7Q9BYR0 210 aa5.57□□□□□ -1.52
LSM1-205ENST00000523511 LCE1DQ5T752 114 aa5.56□□□□□ -1.52
LSM1-205ENST00000523511 GPR98Q8WXG9 6306 aa5.55□□□□□ -1.52
LSM1-205ENST00000523511 KRTAP23-1A1A580 65 aa5.54□□□□□ -1.52
LSM1-205ENST00000523511 RPS28P62857 69 aaKnown RBP5.54□□□□□ -1.52
LSM1-205ENST00000523511 KRTAP4-3Q9BYR4 195 aa5.53□□□□□ -1.52
LSM1-205ENST00000523511 KRTAP19-4Q3LI73 84 aa5.52□□□□□ -1.53
LSM1-205ENST00000523511 CDC42SE1Q9NRR8 79 aa5.49□□□□□ -1.53
LSM1-205ENST00000523511 MT4P47944 62 aa5.48□□□□□ -1.53
LSM1-205ENST00000523511 PCP4P48539 62 aa5.43□□□□□ -1.54
LSM1-205ENST00000523511 KRTAP5-4Q6L8H1 288 aa5.43□□□□□ -1.54
LSM1-205ENST00000523511 ROMO1P60602 79 aa5.38□□□□□ -1.55
LSM1-205ENST00000523511 HMCN1Q96RW7 5635 aa5.38□□□□□ -1.55
LSM1-205ENST00000523511 KRTAP15-1Q3LI76 137 aa5.36□□□□□ -1.55
LSM1-205ENST00000523511 KRTAP4-2Q9BYR5 136 aa5.33□□□□□ -1.56
LSM1-205ENST00000523511 LCE3CQ5T5A8 94 aa5.25□□□□□ -1.57
LSM1-205ENST00000523511 KRTAP12-4P60329 112 aa5.24□□□□□ -1.57
LSM1-205ENST00000523511 KRTAP5-5Q701N2 237 aaPredicted RBP5.23□□□□□ -1.57
LSM1-205ENST00000523511 KRTAP4-11Q9BYQ6 195 aa5.21□□□□□ -1.58
LSM1-205ENST00000523511 AHNAK2Q8IVF2 5795 aa5.21□□□□□ -1.58
LSM1-205ENST00000523511 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
LSM1-205ENST00000523511 KRTAP20-2Q3LI61 65 aa5.13□□□□□ -1.59
LSM1-205ENST00000523511 KRTAP5-10Q6L8G5 202 aa5.08□□□□□ -1.6
LSM1-205ENST00000523511 KRTAP5-3Q6L8H2 238 aa5□□□□□ -1.61
LSM1-205ENST00000523511 SYNE1Q8NF91 8797 aaKnown RBP4.99□□□□□ -1.61
LSM1-205ENST00000523511 MT1AP04731 61 aa4.94□□□□□ -1.62
LSM1-205ENST00000523511 KRTAP5-7Q6L8G8 165 aa4.92□□□□□ -1.62
LSM1-205ENST00000523511 KRTAP6-1Q3LI64 71 aa4.86□□□□□ -1.63
LSM1-205ENST00000523511 BRK1Q8WUW1 75 aa4.85□□□□□ -1.63
LSM1-205ENST00000523511 KRTAP9-6A8MVA2 160 aa4.81□□□□□ -1.64
LSM1-205ENST00000523511 KRTAP5-2Q701N4 177 aa4.75□□□□□ -1.65
LSM1-205ENST00000523511 H3BS24 57 aa4.71□□□□□ -1.66
LSM1-205ENST00000523511 KRTAP6-2Q3LI66 62 aa4.66□□□□□ -1.66
LSM1-205ENST00000523511 PMAIP1Q13794 54 aa4.6□□□□□ -1.67
LSM1-205ENST00000523511 MT3P25713 68 aa4.59□□□□□ -1.67
LSM1-205ENST00000523511 KRTAP5-8O75690 187 aa4.49□□□□□ -1.69
LSM1-205ENST00000523511 OBSCNQ5VST9 7968 aa4.43□□□□□ -1.7
LSM1-205ENST00000523511 PRAC1Q96KF2 57 aa4.29□□□□□ -1.72
LSM1-205ENST00000523511 AHNAKQ09666 5890 aaKnown RBP4.25□□□□□ -1.73
LSM1-205ENST00000523511 KRTAP5-1Q6L8H4 278 aa4.25□□□□□ -1.73
LSM1-205ENST00000523511 PRO0628Q9UI54 55 aa4.25□□□□□ -1.73
LSM1-205ENST00000523511 MUC5ACP98088 5654 aa4.24□□□□□ -1.73
LSM1-205ENST00000523511 MUC5BQ9HC84 5762 aaPredicted RBP4.23□□□□□ -1.73
LSM1-205ENST00000523511 LCE1EQ5T753 118 aa4.19□□□□□ -1.74
LSM1-205ENST00000523511 KTN1-AS1Q86SY8 53 aa4.06□□□□□ -1.76
LSM1-205ENST00000523511 SVIPQ8NHG7 77 aa3.93□□□□□ -1.78
LSM1-205ENST00000523511 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
LSM1-205ENST00000523511 LCE1CQ5T751 118 aa3.87□□□□□ -1.79
LSM1-205ENST00000523511 LUZP6Q538Z0 58 aa3.85□□□□□ -1.79
LSM1-205ENST00000523511 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
LSM1-205ENST00000523511 LCE3EQ5T5B0 92 aa3.62□□□□□ -1.83
LSM1-205ENST00000523511 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.61□□□□□ -1.83
LSM1-205ENST00000523511 KRTAP5-11Q6L8G4 156 aa3.52□□□□□ -1.85
LSM1-205ENST00000523511 LCE1FQ5T754 118 aa3.43□□□□□ -1.86
LSM1-205ENST00000523511 KRTAP21-2Q3LI59 83 aa3.2□□□□□ -1.9
LSM1-205ENST00000523511 PHGR1C9JFL3 82 aa3□□□□□ -1.93
LSM1-205ENST00000523511 KRTAP4-4Q9BYR3 166 aa3□□□□□ -1.93
LSM1-205ENST00000523511 NDUFAF8A1L188 74 aa2.97□□□□□ -1.93
LSM1-205ENST00000523511 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
LSM1-205ENST00000523511 PRM1P04553 51 aa2.7□□□□□ -1.98
LSM1-205ENST00000523511 A0A0A0MQY5 61 aa2.59□□□□□ -1.99
LSM1-205ENST00000523511 INE1O15225 51 aa2.48□□□□□ -2.01
LSM1-205ENST00000523511 KRTAP21-1Q3LI58 79 aa2.31□□□□□ -2.04
LSM1-205ENST00000523511 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 234.1 ms