RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 LCE3DQ9BYE3 92 aa5.32□□□□□ -1.56
USP42-207ENST00000521713 RNF213Q63HN8 5207 aa5.3□□□□□ -1.56
USP42-207ENST00000521713 LCE3EQ5T5B0 92 aa5.3□□□□□ -1.56
USP42-207ENST00000521713 FAT4Q6V0I7 4981 aa5.29□□□□□ -1.56
USP42-207ENST00000521713 KRTAP9-6A0A140TA67 174 aa5.19□□□□□ -1.58
USP42-207ENST00000521713 MT1MQ8N339 61 aa5.18□□□□□ -1.58
USP42-207ENST00000521713 KRTAP4-7Q9BYR0 210 aa5.17□□□□□ -1.58
USP42-207ENST00000521713 HMCN2Q8NDA2 5059 aa5.11□□□□□ -1.59
USP42-207ENST00000521713 FSIP2Q5CZC0 6907 aa5.11□□□□□ -1.59
USP42-207ENST00000521713 MT3P25713 68 aa5.01□□□□□ -1.61
USP42-207ENST00000521713 KRTAP19-7Q3SYF9 63 aa4.99□□□□□ -1.61
USP42-207ENST00000521713 MT4P47944 62 aa4.97□□□□□ -1.61
USP42-207ENST00000521713 MUC2Q02817 5179 aa4.91□□□□□ -1.62
USP42-207ENST00000521713 PRM1P04553 51 aa4.91□□□□□ -1.62
USP42-207ENST00000521713 KRTAP4-3Q9BYR4 195 aa4.89□□□□□ -1.63
USP42-207ENST00000521713 KRTAP6-3Q3LI67 103 aa4.88□□□□□ -1.63
USP42-207ENST00000521713 KRTAP9-7A8MTY7 169 aa4.87□□□□□ -1.63
USP42-207ENST00000521713 LCE1AQ5T7P2 110 aa4.87□□□□□ -1.63
USP42-207ENST00000521713 LOC100996750A0A140TA64 210 aa4.85□□□□□ -1.63
USP42-207ENST00000521713 KRTAP2-3P0C7H8 128 aa4.83□□□□□ -1.64
USP42-207ENST00000521713 KRTAP2-4Q9BYR9 128 aa4.83□□□□□ -1.64
USP42-207ENST00000521713 KRTAP2-1Q9BYU5 128 aa4.83□□□□□ -1.64
USP42-207ENST00000521713 MT1AP04731 61 aa4.81□□□□□ -1.64
USP42-207ENST00000521713 KRTAP20-1Q3LI63 56 aa4.8□□□□□ -1.64
USP42-207ENST00000521713 SYNE2Q8WXH0 6885 aaKnown RBP4.75□□□□□ -1.65
USP42-207ENST00000521713 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.74□□□□□ -1.65
USP42-207ENST00000521713 LCE1DQ5T752 114 aa4.64□□□□□ -1.67
USP42-207ENST00000521713 LCE5AQ5TCM9 118 aa4.63□□□□□ -1.67
USP42-207ENST00000521713 LCE1BQ5T7P3 118 aa4.62□□□□□ -1.67
USP42-207ENST00000521713 OBSCNQ5VST9 7968 aa4.59□□□□□ -1.67
USP42-207ENST00000521713 LCE4AQ5TA78 99 aa4.56□□□□□ -1.68
USP42-207ENST00000521713 KRTAP2-2Q9BYT5 123 aa4.56□□□□□ -1.68
USP42-207ENST00000521713 USH2AO75445 5202 aa4.46□□□□□ -1.7
USP42-207ENST00000521713 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
USP42-207ENST00000521713 KRTAP4-9Q9BYQ8 210 aa4.43□□□□□ -1.7
USP42-207ENST00000521713 KRTAP9-4Q9BYQ2 154 aa4.42□□□□□ -1.7
USP42-207ENST00000521713 KRTAP6-2Q3LI66 62 aa4.39□□□□□ -1.71
USP42-207ENST00000521713 KRTAP9-6A8MVA2 160 aa4.38□□□□□ -1.71
USP42-207ENST00000521713 FCGBPQ9Y6R7 5405 aaPredicted RBP4.24□□□□□ -1.73
USP42-207ENST00000521713 KRTAP5-9P26371 169 aa4.23□□□□□ -1.73
USP42-207ENST00000521713 KMT2DO14686 5537 aa4.21□□□□□ -1.74
USP42-207ENST00000521713 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
USP42-207ENST00000521713 MACF1Q9UPN3 7388 aaKnown RBP4.13□□□□□ -1.75
USP42-207ENST00000521713 NEBP20929 6669 aa4.12□□□□□ -1.75
USP42-207ENST00000521713 SSPOA2VEC9 5147 aa4.11□□□□□ -1.75
USP42-207ENST00000521713 MUC19Q7Z5P9 8384 aa4.1□□□□□ -1.75
USP42-207ENST00000521713 MDN1Q9NU22 5596 aa3.95□□□□□ -1.78
USP42-207ENST00000521713 LCE1CQ5T751 118 aa3.9□□□□□ -1.79
USP42-207ENST00000521713 LCE1EQ5T753 118 aa3.9□□□□□ -1.79
USP42-207ENST00000521713 LCE1FQ5T754 118 aa3.9□□□□□ -1.79
USP42-207ENST00000521713 MUC12Q9UKN1 5478 aa3.89□□□□□ -1.79
USP42-207ENST00000521713 KRTAP9-9Q9BYP9 154 aa3.87□□□□□ -1.79
USP42-207ENST00000521713 KRTAP20-2Q3LI61 65 aa3.83□□□□□ -1.8
USP42-207ENST00000521713 KRTAP4-6Q9BYQ5 205 aa3.82□□□□□ -1.8
USP42-207ENST00000521713 GPR98Q8WXG9 6306 aa3.8□□□□□ -1.8
USP42-207ENST00000521713 KRTAP5-4Q6L8H1 288 aa3.62□□□□□ -1.83
USP42-207ENST00000521713 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
USP42-207ENST00000521713 KRTAP5-5Q701N2 237 aaPredicted RBP3.44□□□□□ -1.86
USP42-207ENST00000521713 KRTAP5-3Q6L8H2 238 aa3.23□□□□□ -1.89
USP42-207ENST00000521713 KRTAP4-12Q9BQ66 201 aa3.22□□□□□ -1.89
USP42-207ENST00000521713 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
USP42-207ENST00000521713 AHNAK2Q8IVF2 5795 aa3.18□□□□□ -1.9
USP42-207ENST00000521713 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
USP42-207ENST00000521713 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
USP42-207ENST00000521713 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.92
USP42-207ENST00000521713 KRTAP5-8O75690 187 aa2.91□□□□□ -1.94
USP42-207ENST00000521713 KRTAP5-2Q701N4 177 aa2.91□□□□□ -1.94
USP42-207ENST00000521713 KRTAP5-10Q6L8G5 202 aa2.66□□□□□ -1.98
USP42-207ENST00000521713 MUC5BQ9HC84 5762 aaPredicted RBP2.62□□□□□ -1.99
USP42-207ENST00000521713 AHNAKQ09666 5890 aaKnown RBP2.61□□□□□ -1.99
USP42-207ENST00000521713 KRTAP5-11Q6L8G4 156 aa2.57□□□□□ -2
USP42-207ENST00000521713 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
USP42-207ENST00000521713 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
USP42-207ENST00000521713 KRTAP21-2Q3LI59 83 aa2.35□□□□□ -2.03
USP42-207ENST00000521713 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
USP42-207ENST00000521713 KRTAP5-7Q6L8G8 165 aa2.3□□□□□ -2.04
USP42-207ENST00000521713 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.05
USP42-207ENST00000521713 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 54.5 ms