RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 COX6B2Q6YFQ2 88 aa2.95□□□□□ -1.94
NUP54-218ENST00000515460 MDN1Q9NU22 5596 aa2.91□□□□□ -1.94
NUP54-218ENST00000515460 H1FX-AS1Q4G0G2 97 aa2.91□□□□□ -1.94
NUP54-218ENST00000515460 CRIPTQ9P021 101 aa2.91□□□□□ -1.94
NUP54-218ENST00000515460 TPRXLQ17RH7 258 aa2.9□□□□□ -1.95
NUP54-218ENST00000515460 PRO2289Q9P1D8 64 aa2.88□□□□□ -1.95
NUP54-218ENST00000515460 KRTAP2-3P0C7H8 128 aa2.87□□□□□ -1.95
NUP54-218ENST00000515460 KRTAP2-4Q9BYR9 128 aa2.87□□□□□ -1.95
NUP54-218ENST00000515460 RPL37P61927 97 aaKnown RBP2.85□□□□□ -1.95
NUP54-218ENST00000515460 KRTAP13-2Q52LG2 175 aa2.82□□□□□ -1.96
NUP54-218ENST00000515460 PLAC4Q8WY50 150 aa2.82□□□□□ -1.96
NUP54-218ENST00000515460 KRTAP13-1Q8IUC0 172 aa2.79□□□□□ -1.96
NUP54-218ENST00000515460 MT1HP80294 61 aa2.78□□□□□ -1.96
NUP54-218ENST00000515460 PRLHP81277 87 aa2.78□□□□□ -1.96
NUP54-218ENST00000515460 AHNAK2Q8IVF2 5795 aa2.78□□□□□ -1.96
NUP54-218ENST00000515460 PP632Q6XCG6 107 aa2.77□□□□□ -1.97
NUP54-218ENST00000515460 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
NUP54-218ENST00000515460 KRTAP4-1Q9BYQ7 146 aa2.77□□□□□ -1.97
NUP54-218ENST00000515460 INE1O15225 51 aa2.76□□□□□ -1.97
NUP54-218ENST00000515460 SPINK1P00995 79 aa2.74□□□□□ -1.97
NUP54-218ENST00000515460 C10orf95Q9H7T3 257 aa2.74□□□□□ -1.97
NUP54-218ENST00000515460 KRTAP2-1Q9BYU5 128 aa2.73□□□□□ -1.97
NUP54-218ENST00000515460 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
NUP54-218ENST00000515460 R4GN34 69 aa2.72□□□□□ -1.97
NUP54-218ENST00000515460 KRTAP19-2Q3LHN2 52 aa2.7□□□□□ -1.98
NUP54-218ENST00000515460 SPRR5A0A1B0GTR4 108 aa2.67□□□□□ -1.98
NUP54-218ENST00000515460 S4R3F8 94 aa2.67□□□□□ -1.98
NUP54-218ENST00000515460 M0R2T5 61 aa2.65□□□□□ -1.99
NUP54-218ENST00000515460 RPS29P62273 56 aaKnown RBP2.65□□□□□ -1.99
NUP54-218ENST00000515460 FLGP20930 4061 aaPredicted RBP2.65□□□□□ -1.99
NUP54-218ENST00000515460 DSTQ03001 7570 aaKnown RBP2.63□□□□□ -1.99
NUP54-218ENST00000515460 KRTAP19-6Q3LI70 58 aa2.61□□□□□ -1.99
NUP54-218ENST00000515460 C9orf92A6NGG3 77 aa2.6□□□□□ -1.99
NUP54-218ENST00000515460 HMCN1Q96RW7 5635 aa2.59□□□□□ -1.99
NUP54-218ENST00000515460 A0A0D9SG42 100 aa2.57□□□□□ -2
NUP54-218ENST00000515460 KRTAP12-1P59990 96 aa2.55□□□□□ -2
NUP54-218ENST00000515460 KRTAP13-4Q3LI77 160 aa2.55□□□□□ -2
NUP54-218ENST00000515460 KRTAP5-10Q6L8G5 202 aa2.54□□□□□ -2
NUP54-218ENST00000515460 AHNAKQ09666 5890 aaKnown RBP2.53□□□□□ -2
NUP54-218ENST00000515460 M0QZ58 72 aa2.52□□□□□ -2.01
NUP54-218ENST00000515460 KRTAP5-7Q6L8G8 165 aa2.51□□□□□ -2.01
NUP54-218ENST00000515460 SPRR2EP22531 72 aa2.48□□□□□ -2.01
NUP54-218ENST00000515460 SPRR2BP35325 72 aa2.48□□□□□ -2.01
NUP54-218ENST00000515460 SPRR2AP35326 72 aa2.48□□□□□ -2.01
NUP54-218ENST00000515460 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
NUP54-218ENST00000515460 MT2AP02795 61 aa2.46□□□□□ -2.02
NUP54-218ENST00000515460 KRTAP10-10P60014 251 aa2.46□□□□□ -2.02
NUP54-218ENST00000515460 MT1FP04733 61 aa2.44□□□□□ -2.02
NUP54-218ENST00000515460 SPRR2DP22532 72 aa2.4□□□□□ -2.03
NUP54-218ENST00000515460 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
NUP54-218ENST00000515460 SPRR2FQ96RM1 72 aa2.33□□□□□ -2.04
NUP54-218ENST00000515460 MUC5ACP98088 5654 aa2.31□□□□□ -2.04
NUP54-218ENST00000515460 TNP1P09430 55 aa2.25□□□□□ -2.05
NUP54-218ENST00000515460 MT4P47944 62 aa2.23□□□□□ -2.05
NUP54-218ENST00000515460 MT1BP07438 61 aa2.21□□□□□ -2.06
NUP54-218ENST00000515460 KRTAP19-8Q3LI54 63 aa2.18□□□□□ -2.06
NUP54-218ENST00000515460 SPRR2GQ9BYE4 73 aa2.16□□□□□ -2.06
NUP54-218ENST00000515460 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
NUP54-218ENST00000515460 MT1XP80297 61 aa2.04□□□□□ -2.08
NUP54-218ENST00000515460 KRTAP8-1Q8IUC2 63 aa2.03□□□□□ -2.08
NUP54-218ENST00000515460 KRTAP12-4P60329 112 aa1.93□□□□□ -2.1
NUP54-218ENST00000515460 KRTAP12-3P60328 96 aa1.9□□□□□ -2.11
NUP54-218ENST00000515460 SYNE1Q8NF91 8797 aaKnown RBP1.84□□□□□ -2.11
NUP54-218ENST00000515460 KRTAP20-2Q3LI61 65 aa1.83□□□□□ -2.12
NUP54-218ENST00000515460 KRTAP19-7Q3SYF9 63 aa1.83□□□□□ -2.12
NUP54-218ENST00000515460 MT1EP04732 61 aa1.81□□□□□ -2.12
NUP54-218ENST00000515460 KRTAP19-3Q7Z4W3 81 aa1.81□□□□□ -2.12
NUP54-218ENST00000515460 MT1GP13640 62 aa1.76□□□□□ -2.13
NUP54-218ENST00000515460 KRTAP19-5Q3LI72 72 aa1.74□□□□□ -2.13
NUP54-218ENST00000515460 MT1MQ8N339 61 aa1.73□□□□□ -2.13
NUP54-218ENST00000515460 MT1LQ93083 61 aa1.71□□□□□ -2.14
NUP54-218ENST00000515460 PRM1P04553 51 aa1.59□□□□□ -2.15
NUP54-218ENST00000515460 MT1AP04731 61 aa1.55□□□□□ -2.16
NUP54-218ENST00000515460 PHGR1C9JFL3 82 aa1.53□□□□□ -2.16
NUP54-218ENST00000515460 KRTAP6-1Q3LI64 71 aa1.46□□□□□ -2.18
NUP54-218ENST00000515460 KRTAP6-2Q3LI66 62 aa1.41□□□□□ -2.18
NUP54-218ENST00000515460 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
NUP54-218ENST00000515460 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 65 ms