RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MT1EP04732 61 aa5.8□□□□□ -1.48
NUP54-214ENST00000514307 MDN1Q9NU22 5596 aa5.76□□□□□ -1.49
NUP54-214ENST00000514307 SPRR2FQ96RM1 72 aa5.75□□□□□ -1.49
NUP54-214ENST00000514307 MT1LQ93083 61 aa5.68□□□□□ -1.5
NUP54-214ENST00000514307 KRTAP20-1Q3LI63 56 aa5.66□□□□□ -1.5
NUP54-214ENST00000514307 SPRR2EP22531 72 aa5.65□□□□□ -1.5
NUP54-214ENST00000514307 SPRR2BP35325 72 aa5.65□□□□□ -1.5
NUP54-214ENST00000514307 SPRR2AP35326 72 aa5.65□□□□□ -1.5
NUP54-214ENST00000514307 MT1GP13640 62 aa5.64□□□□□ -1.51
NUP54-214ENST00000514307 LCE3CQ5T5A8 94 aa5.64□□□□□ -1.51
NUP54-214ENST00000514307 KRTAP19-3Q7Z4W3 81 aa5.61□□□□□ -1.51
NUP54-214ENST00000514307 SPRR5A0A1B0GTR4 108 aa5.54□□□□□ -1.52
NUP54-214ENST00000514307 LCE1AQ5T7P2 110 aa5.54□□□□□ -1.52
NUP54-214ENST00000514307 LCE5AQ5TCM9 118 aa5.51□□□□□ -1.53
NUP54-214ENST00000514307 LUZP6Q538Z0 58 aa5.5□□□□□ -1.53
NUP54-214ENST00000514307 MT1MQ8N339 61 aa5.47□□□□□ -1.53
NUP54-214ENST00000514307 KRTAP2-3P0C7H8 128 aa5.46□□□□□ -1.54
NUP54-214ENST00000514307 KRTAP2-4Q9BYR9 128 aa5.46□□□□□ -1.54
NUP54-214ENST00000514307 SPRR2DP22532 72 aa5.45□□□□□ -1.54
NUP54-214ENST00000514307 KRTAP4-7Q9BYR0 210 aa5.42□□□□□ -1.54
NUP54-214ENST00000514307 KRTAP4-3Q9BYR4 195 aa5.29□□□□□ -1.56
NUP54-214ENST00000514307 LCE3BQ5TA77 95 aa5.28□□□□□ -1.56
NUP54-214ENST00000514307 KRTAP2-2Q9BYT5 123 aa5.28□□□□□ -1.56
NUP54-214ENST00000514307 KRTAP2-1Q9BYU5 128 aa5.28□□□□□ -1.56
NUP54-214ENST00000514307 KRTAP9-6A8MVA2 160 aa5.2□□□□□ -1.58
NUP54-214ENST00000514307 NDUFAF8A1L188 74 aa5.18□□□□□ -1.58
NUP54-214ENST00000514307 DSTQ03001 7570 aaKnown RBP5.15□□□□□ -1.58
NUP54-214ENST00000514307 LOC100996750A0A140TA64 210 aa5.09□□□□□ -1.59
NUP54-214ENST00000514307 KRTAP4-9Q9BYQ8 210 aa4.97□□□□□ -1.61
NUP54-214ENST00000514307 KRTAP4-6Q9BYQ5 205 aa4.94□□□□□ -1.62
NUP54-214ENST00000514307 KRTAP5-5Q701N2 237 aaPredicted RBP4.9□□□□□ -1.63
NUP54-214ENST00000514307 MT1AP04731 61 aa4.86□□□□□ -1.63
NUP54-214ENST00000514307 MT4P47944 62 aa4.82□□□□□ -1.64
NUP54-214ENST00000514307 LCE1DQ5T752 114 aa4.81□□□□□ -1.64
NUP54-214ENST00000514307 GPR98Q8WXG9 6306 aa4.8□□□□□ -1.64
NUP54-214ENST00000514307 LCE4AQ5TA78 99 aa4.76□□□□□ -1.65
NUP54-214ENST00000514307 KRTAP6-1Q3LI64 71 aa4.75□□□□□ -1.65
NUP54-214ENST00000514307 KRTAP5-4Q6L8H1 288 aa4.75□□□□□ -1.65
NUP54-214ENST00000514307 KRTAP12-4P60329 112 aa4.72□□□□□ -1.65
NUP54-214ENST00000514307 HMCN1Q96RW7 5635 aa4.71□□□□□ -1.66
NUP54-214ENST00000514307 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
NUP54-214ENST00000514307 KRTAP9-4Q9BYQ2 154 aa4.66□□□□□ -1.66
NUP54-214ENST00000514307 H3BS24 57 aa4.59□□□□□ -1.67
NUP54-214ENST00000514307 AHNAK2Q8IVF2 5795 aa4.57□□□□□ -1.68
NUP54-214ENST00000514307 SYNE1Q8NF91 8797 aaKnown RBP4.56□□□□□ -1.68
NUP54-214ENST00000514307 MT3P25713 68 aa4.47□□□□□ -1.69
NUP54-214ENST00000514307 KRTAP20-2Q3LI61 65 aa4.45□□□□□ -1.7
NUP54-214ENST00000514307 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
NUP54-214ENST00000514307 KRTAP5-10Q6L8G5 202 aa4.41□□□□□ -1.7
NUP54-214ENST00000514307 INE1O15225 51 aa4.4□□□□□ -1.71
NUP54-214ENST00000514307 KRTAP5-3Q6L8H2 238 aa4.33□□□□□ -1.72
NUP54-214ENST00000514307 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
NUP54-214ENST00000514307 LCE3DQ9BYE3 92 aa4.26□□□□□ -1.73
NUP54-214ENST00000514307 KRTAP5-7Q6L8G8 165 aa4.19□□□□□ -1.74
NUP54-214ENST00000514307 LCE3EQ5T5B0 92 aa4.14□□□□□ -1.75
NUP54-214ENST00000514307 KRTAP9-9Q9BYP9 154 aa4.12□□□□□ -1.75
NUP54-214ENST00000514307 KRTAP4-12Q9BQ66 201 aa4.08□□□□□ -1.76
NUP54-214ENST00000514307 KRTAP4-11Q9BYQ6 195 aa4.03□□□□□ -1.76
NUP54-214ENST00000514307 OBSCNQ5VST9 7968 aa4□□□□□ -1.77
NUP54-214ENST00000514307 KRTAP5-8O75690 187 aa3.91□□□□□ -1.78
NUP54-214ENST00000514307 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
NUP54-214ENST00000514307 KRTAP4-2Q9BYR5 136 aa3.84□□□□□ -1.79
NUP54-214ENST00000514307 MUC5ACP98088 5654 aa3.74□□□□□ -1.81
NUP54-214ENST00000514307 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
NUP54-214ENST00000514307 KRTAP5-1Q6L8H4 278 aa3.69□□□□□ -1.82
NUP54-214ENST00000514307 MUC5BQ9HC84 5762 aaPredicted RBP3.69□□□□□ -1.82
NUP54-214ENST00000514307 LCE1CQ5T751 118 aa3.61□□□□□ -1.83
NUP54-214ENST00000514307 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
NUP54-214ENST00000514307 PRM1P04553 51 aa3.51□□□□□ -1.85
NUP54-214ENST00000514307 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.35□□□□□ -1.87
NUP54-214ENST00000514307 KRTAP5-11Q6L8G4 156 aa3.15□□□□□ -1.91
NUP54-214ENST00000514307 KRTAP21-2Q3LI59 83 aa3.12□□□□□ -1.91
NUP54-214ENST00000514307 LCE1FQ5T754 118 aa2.95□□□□□ -1.94
NUP54-214ENST00000514307 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
NUP54-214ENST00000514307 PHGR1C9JFL3 82 aa2.71□□□□□ -1.98
NUP54-214ENST00000514307 MUC19Q7Z5P9 8384 aa2.46□□□□□ -2.02
NUP54-214ENST00000514307 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
NUP54-214ENST00000514307 MUC16Q8WXI7 14507 aa1.73□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 137 ms