RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 K7ERS5 55 aa3.62□□□□□ -1.83
NUP54-207ENST00000508583 SPRR2FQ96RM1 72 aa3.59□□□□□ -1.83
NUP54-207ENST00000508583 MUC12Q9UKN1 5478 aa3.57□□□□□ -1.84
NUP54-207ENST00000508583 A6NED7 52 aa3.56□□□□□ -1.84
NUP54-207ENST00000508583 NEBP20929 6669 aa3.55□□□□□ -1.84
NUP54-207ENST00000508583 TNP1P09430 55 aa3.54□□□□□ -1.84
NUP54-207ENST00000508583 SPRR2EP22531 72 aa3.5□□□□□ -1.85
NUP54-207ENST00000508583 SPRR2BP35325 72 aa3.5□□□□□ -1.85
NUP54-207ENST00000508583 SPRR2AP35326 72 aa3.5□□□□□ -1.85
NUP54-207ENST00000508583 MDN1Q9NU22 5596 aa3.5□□□□□ -1.85
NUP54-207ENST00000508583 C10orf95Q9H7T3 257 aa3.49□□□□□ -1.85
NUP54-207ENST00000508583 KRTAP5-1Q6L8H4 278 aa3.47□□□□□ -1.85
NUP54-207ENST00000508583 LCE1AQ5T7P2 110 aa3.45□□□□□ -1.86
NUP54-207ENST00000508583 KRTAP25-1Q3LHN0 102 aa3.43□□□□□ -1.86
NUP54-207ENST00000508583 CDC42SE1Q9NRR8 79 aa3.43□□□□□ -1.86
NUP54-207ENST00000508583 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
NUP54-207ENST00000508583 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
NUP54-207ENST00000508583 SPRR2DP22532 72 aa3.39□□□□□ -1.87
NUP54-207ENST00000508583 KRTAP19-7Q3SYF9 63 aa3.39□□□□□ -1.87
NUP54-207ENST00000508583 KRTAP4-4Q9BYR3 166 aa3.39□□□□□ -1.87
NUP54-207ENST00000508583 MT1EP04732 61 aa3.38□□□□□ -1.87
NUP54-207ENST00000508583 LCE3AQ5TA76 89 aa3.38□□□□□ -1.87
NUP54-207ENST00000508583 KRTAP2-3P0C7H8 128 aa3.37□□□□□ -1.87
NUP54-207ENST00000508583 KRTAP19-5Q3LI72 72 aa3.37□□□□□ -1.87
NUP54-207ENST00000508583 KRTAP2-4Q9BYR9 128 aa3.37□□□□□ -1.87
NUP54-207ENST00000508583 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.87
NUP54-207ENST00000508583 ROMO1P60602 79 aa3.33□□□□□ -1.88
NUP54-207ENST00000508583 NDUFAF8A1L188 74 aa3.32□□□□□ -1.88
NUP54-207ENST00000508583 PP632Q6XCG6 107 aa3.32□□□□□ -1.88
NUP54-207ENST00000508583 MT1GP13640 62 aa3.3□□□□□ -1.88
NUP54-207ENST00000508583 KRTAP12-3P60328 96 aa3.3□□□□□ -1.88
NUP54-207ENST00000508583 LCE1EQ5T753 118 aa3.3□□□□□ -1.88
NUP54-207ENST00000508583 KRTAP2-2Q9BYT5 123 aa3.27□□□□□ -1.89
NUP54-207ENST00000508583 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
NUP54-207ENST00000508583 MT1LQ93083 61 aa3.26□□□□□ -1.89
NUP54-207ENST00000508583 BRK1Q8WUW1 75 aa3.25□□□□□ -1.89
NUP54-207ENST00000508583 MT1MQ8N339 61 aa3.2□□□□□ -1.9
NUP54-207ENST00000508583 DSTQ03001 7570 aaKnown RBP3.15□□□□□ -1.9
NUP54-207ENST00000508583 KRTAP4-3Q9BYR4 195 aa3.12□□□□□ -1.91
NUP54-207ENST00000508583 PRO0628Q9UI54 55 aa3.11□□□□□ -1.91
NUP54-207ENST00000508583 PMAIP1Q13794 54 aa3.07□□□□□ -1.92
NUP54-207ENST00000508583 MT3P25713 68 aa3.04□□□□□ -1.92
NUP54-207ENST00000508583 LCE3CQ5T5A8 94 aa3.04□□□□□ -1.92
NUP54-207ENST00000508583 OBSCNQ5VST9 7968 aa3□□□□□ -1.93
NUP54-207ENST00000508583 KRTAP5-2Q701N4 177 aa2.98□□□□□ -1.93
NUP54-207ENST00000508583 MT4P47944 62 aa2.95□□□□□ -1.94
NUP54-207ENST00000508583 KRTAP5-5Q701N2 237 aaPredicted RBP2.92□□□□□ -1.94
NUP54-207ENST00000508583 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
NUP54-207ENST00000508583 HMCN1Q96RW7 5635 aa2.88□□□□□ -1.95
NUP54-207ENST00000508583 KRTAP12-4P60329 112 aa2.87□□□□□ -1.95
NUP54-207ENST00000508583 SPRR5A0A1B0GTR4 108 aa2.83□□□□□ -1.96
NUP54-207ENST00000508583 KTN1-AS1Q86SY8 53 aa2.83□□□□□ -1.96
NUP54-207ENST00000508583 KRTAP9-6A8MVA2 160 aa2.8□□□□□ -1.96
NUP54-207ENST00000508583 MT1AP04731 61 aa2.79□□□□□ -1.96
NUP54-207ENST00000508583 KRTAP20-2Q3LI61 65 aa2.78□□□□□ -1.96
NUP54-207ENST00000508583 GPR98Q8WXG9 6306 aa2.78□□□□□ -1.96
NUP54-207ENST00000508583 SYNE1Q8NF91 8797 aaKnown RBP2.76□□□□□ -1.97
NUP54-207ENST00000508583 KRTAP6-1Q3LI64 71 aa2.72□□□□□ -1.97
NUP54-207ENST00000508583 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
NUP54-207ENST00000508583 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
NUP54-207ENST00000508583 KRTAP5-10Q6L8G5 202 aa2.67□□□□□ -1.98
NUP54-207ENST00000508583 KRTAP6-2Q3LI66 62 aa2.59□□□□□ -1.99
NUP54-207ENST00000508583 KRTAP5-7Q6L8G8 165 aa2.54□□□□□ -2
NUP54-207ENST00000508583 KRTAP5-8O75690 187 aa2.49□□□□□ -2.01
NUP54-207ENST00000508583 LCE3EQ5T5B0 92 aa2.26□□□□□ -2.05
NUP54-207ENST00000508583 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
NUP54-207ENST00000508583 MUC5ACP98088 5654 aa2.22□□□□□ -2.05
NUP54-207ENST00000508583 MUC5BQ9HC84 5762 aaPredicted RBP2.19□□□□□ -2.06
NUP54-207ENST00000508583 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
NUP54-207ENST00000508583 LCE1CQ5T751 118 aa2.15□□□□□ -2.07
NUP54-207ENST00000508583 LCE1BQ5T7P3 118 aa2.15□□□□□ -2.07
NUP54-207ENST00000508583 INE1O15225 51 aa1.97□□□□□ -2.09
NUP54-207ENST00000508583 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
NUP54-207ENST00000508583 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
NUP54-207ENST00000508583 PRM1P04553 51 aa1.69□□□□□ -2.14
NUP54-207ENST00000508583 PHGR1C9JFL3 82 aa1.65□□□□□ -2.15
NUP54-207ENST00000508583 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
NUP54-207ENST00000508583 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 60.5 ms