RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
RNF4-208ENST00000507247 MT1EP04732 61 aa5.23□□□□□ -1.57
RNF4-208ENST00000507247 LCE1AQ5T7P2 110 aa5.21□□□□□ -1.58
RNF4-208ENST00000507247 KRTAP12-3P60328 96 aa5.18□□□□□ -1.58
RNF4-208ENST00000507247 PP632Q6XCG6 107 aa5.17□□□□□ -1.58
RNF4-208ENST00000507247 SPRR2DP22532 72 aa5.1□□□□□ -1.59
RNF4-208ENST00000507247 PRAC1Q96KF2 57 aa5.09□□□□□ -1.59
RNF4-208ENST00000507247 KRTAP2-2Q9BYT5 123 aa5.09□□□□□ -1.59
RNF4-208ENST00000507247 KRTAP2-1Q9BYU5 128 aa5.09□□□□□ -1.59
RNF4-208ENST00000507247 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
RNF4-208ENST00000507247 MT1LQ93083 61 aa5.08□□□□□ -1.6
RNF4-208ENST00000507247 LCE5AQ5TCM9 118 aa5.03□□□□□ -1.6
RNF4-208ENST00000507247 KTN1-AS1Q86SY8 53 aa5.03□□□□□ -1.6
RNF4-208ENST00000507247 MT1GP13640 62 aa4.99□□□□□ -1.61
RNF4-208ENST00000507247 KRTAP15-1Q3LI76 137 aa4.99□□□□□ -1.61
RNF4-208ENST00000507247 LCE3BQ5TA77 95 aa4.98□□□□□ -1.61
RNF4-208ENST00000507247 MT1MQ8N339 61 aa4.94□□□□□ -1.62
RNF4-208ENST00000507247 KRTAP4-7Q9BYR0 210 aa4.89□□□□□ -1.63
RNF4-208ENST00000507247 KRTAP4-3Q9BYR4 195 aa4.85□□□□□ -1.63
RNF4-208ENST00000507247 KRTAP19-4Q3LI73 84 aa4.84□□□□□ -1.63
RNF4-208ENST00000507247 LCE3CQ5T5A8 94 aa4.81□□□□□ -1.64
RNF4-208ENST00000507247 DSTQ03001 7570 aaKnown RBP4.75□□□□□ -1.65
RNF4-208ENST00000507247 SVIPQ8NHG7 77 aa4.75□□□□□ -1.65
RNF4-208ENST00000507247 KRTAP4-9Q9BYQ8 210 aa4.72□□□□□ -1.65
RNF4-208ENST00000507247 GPR98Q8WXG9 6306 aa4.7□□□□□ -1.66
RNF4-208ENST00000507247 LOC100996750A0A140TA64 210 aa4.61□□□□□ -1.67
RNF4-208ENST00000507247 KRTAP9-6A8MVA2 160 aa4.58□□□□□ -1.68
RNF4-208ENST00000507247 LCE1DQ5T752 114 aa4.56□□□□□ -1.68
RNF4-208ENST00000507247 SPRR5A0A1B0GTR4 108 aa4.51□□□□□ -1.69
RNF4-208ENST00000507247 MT4P47944 62 aa4.5□□□□□ -1.69
RNF4-208ENST00000507247 KRTAP5-5Q701N2 237 aaPredicted RBP4.5□□□□□ -1.69
RNF4-208ENST00000507247 LCE4AQ5TA78 99 aa4.46□□□□□ -1.7
RNF4-208ENST00000507247 KRTAP5-4Q6L8H1 288 aa4.44□□□□□ -1.7
RNF4-208ENST00000507247 HMCN1Q96RW7 5635 aa4.42□□□□□ -1.7
RNF4-208ENST00000507247 H3BS24 57 aa4.41□□□□□ -1.7
RNF4-208ENST00000507247 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
RNF4-208ENST00000507247 AHNAK2Q8IVF2 5795 aa4.32□□□□□ -1.72
RNF4-208ENST00000507247 MT1AP04731 61 aa4.32□□□□□ -1.72
RNF4-208ENST00000507247 KRTAP6-1Q3LI64 71 aa4.29□□□□□ -1.72
RNF4-208ENST00000507247 KRTAP5-10Q6L8G5 202 aa4.29□□□□□ -1.72
RNF4-208ENST00000507247 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
RNF4-208ENST00000507247 KRTAP20-2Q3LI61 65 aa4.17□□□□□ -1.74
RNF4-208ENST00000507247 KRTAP5-3Q6L8H2 238 aa4.16□□□□□ -1.74
RNF4-208ENST00000507247 SYNE1Q8NF91 8797 aaKnown RBP4.16□□□□□ -1.74
RNF4-208ENST00000507247 LUZP6Q538Z0 58 aa4.12□□□□□ -1.75
RNF4-208ENST00000507247 KRTAP9-4Q9BYQ2 154 aa4.12□□□□□ -1.75
RNF4-208ENST00000507247 KRTAP5-7Q6L8G8 165 aa4.11□□□□□ -1.75
RNF4-208ENST00000507247 KRTAP6-2Q3LI66 62 aa3.99□□□□□ -1.77
RNF4-208ENST00000507247 KRTAP5-2Q701N4 177 aa3.98□□□□□ -1.77
RNF4-208ENST00000507247 MT3P25713 68 aa3.9□□□□□ -1.79
RNF4-208ENST00000507247 NDUFAF8A1L188 74 aa3.84□□□□□ -1.79
RNF4-208ENST00000507247 KRTAP4-11Q9BYQ6 195 aa3.83□□□□□ -1.8
RNF4-208ENST00000507247 KRTAP5-8O75690 187 aa3.72□□□□□ -1.81
RNF4-208ENST00000507247 OBSCNQ5VST9 7968 aa3.62□□□□□ -1.83
RNF4-208ENST00000507247 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
RNF4-208ENST00000507247 MUC5ACP98088 5654 aa3.57□□□□□ -1.84
RNF4-208ENST00000507247 MUC5BQ9HC84 5762 aaPredicted RBP3.55□□□□□ -1.84
RNF4-208ENST00000507247 LCE3DQ9BYE3 92 aa3.55□□□□□ -1.84
RNF4-208ENST00000507247 KRTAP9-9Q9BYP9 154 aa3.5□□□□□ -1.85
RNF4-208ENST00000507247 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
RNF4-208ENST00000507247 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
RNF4-208ENST00000507247 A0A0A0MQY5 61 aa3.45□□□□□ -1.86
RNF4-208ENST00000507247 LCE3EQ5T5B0 92 aa3.42□□□□□ -1.86
RNF4-208ENST00000507247 KRTAP4-12Q9BQ66 201 aa3.33□□□□□ -1.88
RNF4-208ENST00000507247 KRTAP4-2Q9BYR5 136 aa3.28□□□□□ -1.88
RNF4-208ENST00000507247 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
RNF4-208ENST00000507247 LCE1CQ5T751 118 aa3.22□□□□□ -1.89
RNF4-208ENST00000507247 INE1O15225 51 aa3.13□□□□□ -1.91
RNF4-208ENST00000507247 KRTAP5-6Q6L8G9 129 aaPredicted RBP3□□□□□ -1.93
RNF4-208ENST00000507247 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
RNF4-208ENST00000507247 PRM1P04553 51 aa2.86□□□□□ -1.95
RNF4-208ENST00000507247 KRTAP21-2Q3LI59 83 aa2.82□□□□□ -1.96
RNF4-208ENST00000507247 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
RNF4-208ENST00000507247 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2
RNF4-208ENST00000507247 PHGR1C9JFL3 82 aa2.52□□□□□ -2.01
RNF4-208ENST00000507247 MUC19Q7Z5P9 8384 aa2.24□□□□□ -2.05
RNF4-208ENST00000507247 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
RNF4-208ENST00000507247 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 94.9 ms