RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 MT1XP80297 61 aa3.01□□□□□ -1.93
NUP54-204ENST00000506098 FSIP2Q5CZC0 6907 aa2.99□□□□□ -1.93
NUP54-204ENST00000506098 SPRR5A0A1B0GTR4 108 aa2.96□□□□□ -1.94
NUP54-204ENST00000506098 FCGBPQ9Y6R7 5405 aaPredicted RBP2.94□□□□□ -1.94
NUP54-204ENST00000506098 KRTAP10-12P60413 245 aa2.88□□□□□ -1.95
NUP54-204ENST00000506098 KRTAP10-7P60409 375 aaPredicted RBP2.87□□□□□ -1.95
NUP54-204ENST00000506098 TNP1P09430 55 aa2.83□□□□□ -1.96
NUP54-204ENST00000506098 MACF1Q9UPN3 7388 aaKnown RBP2.8□□□□□ -1.96
NUP54-204ENST00000506098 KMT2DO14686 5537 aa2.78□□□□□ -1.96
NUP54-204ENST00000506098 KRTAP5-9P26371 169 aa2.74□□□□□ -1.97
NUP54-204ENST00000506098 KRTAP6-3Q3LI67 103 aa2.74□□□□□ -1.97
NUP54-204ENST00000506098 KRTAP8-1Q8IUC2 63 aa2.74□□□□□ -1.97
NUP54-204ENST00000506098 LCE3AQ5TA76 89 aa2.73□□□□□ -1.97
NUP54-204ENST00000506098 KRTAP19-7Q3SYF9 63 aa2.69□□□□□ -1.98
NUP54-204ENST00000506098 SYNE2Q8WXH0 6885 aaKnown RBP2.69□□□□□ -1.98
NUP54-204ENST00000506098 KRTAP19-5Q3LI72 72 aa2.67□□□□□ -1.98
NUP54-204ENST00000506098 SPRR2FQ96RM1 72 aa2.67□□□□□ -1.98
NUP54-204ENST00000506098 LCE1AQ5T7P2 110 aa2.66□□□□□ -1.98
NUP54-204ENST00000506098 MT1EP04732 61 aa2.64□□□□□ -1.99
NUP54-204ENST00000506098 KRTAP12-3P60328 96 aa2.63□□□□□ -1.99
NUP54-204ENST00000506098 MUC12Q9UKN1 5478 aa2.6□□□□□ -1.99
NUP54-204ENST00000506098 KRTAP19-3Q7Z4W3 81 aa2.58□□□□□ -2
NUP54-204ENST00000506098 SPRR2EP22531 72 aa2.57□□□□□ -2
NUP54-204ENST00000506098 SPRR2BP35325 72 aa2.57□□□□□ -2
NUP54-204ENST00000506098 SPRR2AP35326 72 aa2.57□□□□□ -2
NUP54-204ENST00000506098 KRTAP5-3Q6L8H2 238 aa2.57□□□□□ -2
NUP54-204ENST00000506098 MT1LQ93083 61 aa2.57□□□□□ -2
NUP54-204ENST00000506098 MT1GP13640 62 aa2.55□□□□□ -2
NUP54-204ENST00000506098 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
NUP54-204ENST00000506098 MT1MQ8N339 61 aa2.5□□□□□ -2.01
NUP54-204ENST00000506098 NEBP20929 6669 aa2.49□□□□□ -2.01
NUP54-204ENST00000506098 SPRR2DP22532 72 aa2.48□□□□□ -2.01
NUP54-204ENST00000506098 MT3P25713 68 aa2.46□□□□□ -2.02
NUP54-204ENST00000506098 LCE3CQ5T5A8 94 aa2.46□□□□□ -2.02
NUP54-204ENST00000506098 KRTAP2-2Q9BYT5 123 aa2.44□□□□□ -2.02
NUP54-204ENST00000506098 KRTAP2-3P0C7H8 128 aa2.42□□□□□ -2.02
NUP54-204ENST00000506098 KRTAP4-3Q9BYR4 195 aa2.42□□□□□ -2.02
NUP54-204ENST00000506098 KRTAP2-4Q9BYR9 128 aa2.42□□□□□ -2.02
NUP54-204ENST00000506098 KRTAP20-1Q3LI63 56 aa2.39□□□□□ -2.03
NUP54-204ENST00000506098 DSTQ03001 7570 aaKnown RBP2.39□□□□□ -2.03
NUP54-204ENST00000506098 KRTAP2-1Q9BYU5 128 aa2.36□□□□□ -2.03
NUP54-204ENST00000506098 KRTAP9-6A8MVA2 160 aa2.32□□□□□ -2.04
NUP54-204ENST00000506098 KRTAP5-5Q701N2 237 aaPredicted RBP2.29□□□□□ -2.04
NUP54-204ENST00000506098 KRTAP5-4Q6L8H1 288 aa2.26□□□□□ -2.05
NUP54-204ENST00000506098 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
NUP54-204ENST00000506098 MT1AP04731 61 aa2.2□□□□□ -2.06
NUP54-204ENST00000506098 LCE1EQ5T753 118 aa2.17□□□□□ -2.06
NUP54-204ENST00000506098 KRTAP6-1Q3LI64 71 aa2.16□□□□□ -2.06
NUP54-204ENST00000506098 MT4P47944 62 aa2.14□□□□□ -2.07
NUP54-204ENST00000506098 KRTAP12-4P60329 112 aa2.14□□□□□ -2.07
NUP54-204ENST00000506098 SYNE1Q8NF91 8797 aaKnown RBP2.12□□□□□ -2.07
NUP54-204ENST00000506098 KRTAP20-2Q3LI61 65 aa2.09□□□□□ -2.07
NUP54-204ENST00000506098 KRTAP5-11Q6L8G4 156 aa2.07□□□□□ -2.08
NUP54-204ENST00000506098 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
NUP54-204ENST00000506098 KRTAP5-2Q701N4 177 aa2.02□□□□□ -2.09
NUP54-204ENST00000506098 KRTAP6-2Q3LI66 62 aa2.01□□□□□ -2.09
NUP54-204ENST00000506098 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
NUP54-204ENST00000506098 AHNAK2Q8IVF2 5795 aa1.9□□□□□ -2.11
NUP54-204ENST00000506098 LCE3EQ5T5B0 92 aa1.88□□□□□ -2.11
NUP54-204ENST00000506098 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
NUP54-204ENST00000506098 OBSCNQ5VST9 7968 aa1.84□□□□□ -2.11
NUP54-204ENST00000506098 LCE3DQ9BYE3 92 aa1.82□□□□□ -2.12
NUP54-204ENST00000506098 KRTAP5-8O75690 187 aa1.79□□□□□ -2.12
NUP54-204ENST00000506098 KRTAP5-7Q6L8G8 165 aa1.78□□□□□ -2.12
NUP54-204ENST00000506098 PRM1P04553 51 aa1.77□□□□□ -2.13
NUP54-204ENST00000506098 KRTAP5-1Q6L8H4 278 aa1.77□□□□□ -2.13
NUP54-204ENST00000506098 GPR98Q8WXG9 6306 aa1.72□□□□□ -2.13
NUP54-204ENST00000506098 LCE1CQ5T751 118 aa1.66□□□□□ -2.14
NUP54-204ENST00000506098 LCE1BQ5T7P3 118 aa1.66□□□□□ -2.14
NUP54-204ENST00000506098 MUC5ACP98088 5654 aa1.65□□□□□ -2.15
NUP54-204ENST00000506098 KRTAP4-4Q9BYR3 166 aa1.63□□□□□ -2.15
NUP54-204ENST00000506098 MUC5BQ9HC84 5762 aaPredicted RBP1.51□□□□□ -2.17
NUP54-204ENST00000506098 KRTAP21-2Q3LI59 83 aa1.44□□□□□ -2.18
NUP54-204ENST00000506098 AHNAKQ09666 5890 aaKnown RBP1.42□□□□□ -2.18
NUP54-204ENST00000506098 KRTAP21-1Q3LI58 79 aa1.31□□□□□ -2.2
NUP54-204ENST00000506098 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
NUP54-204ENST00000506098 MUC19Q7Z5P9 8384 aa1.15□□□□□ -2.23
NUP54-204ENST00000506098 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 151.3 ms