RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 PRKDCP78527 4128 aaKnown RBP1.25□□□□□ -2.21
NIPBL-204ENST00000504430 HERC1Q15751 4861 aa1.25□□□□□ -2.21
NIPBL-204ENST00000504430 DNAH7Q8WXX0 4024 aa1.25□□□□□ -2.21
NIPBL-204ENST00000504430 HUWE1Q7Z6Z7 4374 aaKnown RBP1.25□□□□□ -2.21
NIPBL-204ENST00000504430 DNAH1Q9P2D7 4330 aa1.25□□□□□ -2.21
NIPBL-204ENST00000504430 VPS13BQ7Z7G8 4022 aa1.25□□□□□ -2.21
NIPBL-204ENST00000504430 DNAH17Q9UFH2 4485 aa1.24□□□□□ -2.21
NIPBL-204ENST00000504430 DNAH2Q9P225 4427 aa1.23□□□□□ -2.21
NIPBL-204ENST00000504430 ANK3Q12955 4377 aaKnown RBP1.23□□□□□ -2.21
NIPBL-204ENST00000504430 APOBP04114 4563 aaKnown RBP1.22□□□□□ -2.21
NIPBL-204ENST00000504430 DNAH9Q9NYC9 4486 aa1.2□□□□□ -2.22
NIPBL-204ENST00000504430 KMT2CQ8NEZ4 4911 aaKnown RBP1.2□□□□□ -2.22
NIPBL-204ENST00000504430 PKHD1P08F94 4074 aa1.2□□□□□ -2.22
NIPBL-204ENST00000504430 HSPG2P98160 4391 aa1.19□□□□□ -2.22
NIPBL-204ENST00000504430 AHNAK2Q8IVF2 5795 aa1.18□□□□□ -2.22
NIPBL-204ENST00000504430 ABCA13Q86UQ4 5058 aa1.18□□□□□ -2.22
NIPBL-204ENST00000504430 FAT4Q6V0I7 4981 aa1.18□□□□□ -2.22
NIPBL-204ENST00000504430 KRTAP5-10Q6L8G5 202 aa1.17□□□□□ -2.22
NIPBL-204ENST00000504430 MUC2Q02817 5179 aa1.17□□□□□ -2.22
NIPBL-204ENST00000504430 LRP1BQ9NZR2 4599 aa1.17□□□□□ -2.22
NIPBL-204ENST00000504430 MACF1Q9UPN3 7388 aaKnown RBP1.15□□□□□ -2.22
NIPBL-204ENST00000504430 RPS29P62273 56 aaKnown RBP1.14□□□□□ -2.23
NIPBL-204ENST00000504430 SACSQ9NZJ4 4579 aa1.11□□□□□ -2.23
NIPBL-204ENST00000504430 LRP1Q07954 4544 aaKnown RBP1.09□□□□□ -2.23
NIPBL-204ENST00000504430 KRTAP8-1Q8IUC2 63 aa1.09□□□□□ -2.24
NIPBL-204ENST00000504430 FLGP20930 4061 aaPredicted RBP1.09□□□□□ -2.24
NIPBL-204ENST00000504430 HMCN2Q8NDA2 5059 aa1.07□□□□□ -2.24
NIPBL-204ENST00000504430 FAT1Q14517 4588 aa1.07□□□□□ -2.24
NIPBL-204ENST00000504430 PKD1P98161 4303 aa1.06□□□□□ -2.24
NIPBL-204ENST00000504430 PLECQ15149 4684 aaKnown RBP1.06□□□□□ -2.24
NIPBL-204ENST00000504430 STARD9Q9P2P6 4700 aa1.05□□□□□ -2.24
NIPBL-204ENST00000504430 MUC5ACP98088 5654 aa1.04□□□□□ -2.24
NIPBL-204ENST00000504430 SMR3BP02814 79 aaPredicted RBP1.03□□□□□ -2.24
NIPBL-204ENST00000504430 DYNC1H1Q14204 4646 aaKnown RBP1.02□□□□□ -2.25
NIPBL-204ENST00000504430 DNAH5Q8TE73 4624 aa1.01□□□□□ -2.25
NIPBL-204ENST00000504430 RNF213Q63HN8 5207 aa1.01□□□□□ -2.25
NIPBL-204ENST00000504430 SYNE2Q8WXH0 6885 aaKnown RBP0.98□□□□□ -2.25
NIPBL-204ENST00000504430 KRTAP21-1Q3LI58 79 aa0.96□□□□□ -2.25
NIPBL-204ENST00000504430 FCGBPQ9Y6R7 5405 aaPredicted RBP0.96□□□□□ -2.26
NIPBL-204ENST00000504430 KMT2DO14686 5537 aa0.95□□□□□ -2.26
NIPBL-204ENST00000504430 MDN1Q9NU22 5596 aa0.95□□□□□ -2.26
NIPBL-204ENST00000504430 KRTAP21-2Q3LI59 83 aa0.95□□□□□ -2.26
NIPBL-204ENST00000504430 LPAP08519 4548 aa0.95□□□□□ -2.26
NIPBL-204ENST00000504430 KRTAP6-2Q3LI66 62 aa0.93□□□□□ -2.26
NIPBL-204ENST00000504430 MUC17Q685J3 4493 aa0.93□□□□□ -2.26
NIPBL-204ENST00000504430 SPRR2DP22532 72 aa0.91□□□□□ -2.26
NIPBL-204ENST00000504430 KRTAP19-5Q3LI72 72 aa0.91□□□□□ -2.26
NIPBL-204ENST00000504430 USH2AO75445 5202 aa0.91□□□□□ -2.26
NIPBL-204ENST00000504430 FSIP2Q5CZC0 6907 aa0.87□□□□□ -2.27
NIPBL-204ENST00000504430 KRTAP4-1Q9BYQ7 146 aa0.86□□□□□ -2.27
NIPBL-204ENST00000504430 KRTAP19-6Q3LI70 58 aa0.85□□□□□ -2.27
NIPBL-204ENST00000504430 LRP2P98164 4655 aa0.83□□□□□ -2.28
NIPBL-204ENST00000504430 SPRR2GQ9BYE4 73 aa0.83□□□□□ -2.28
NIPBL-204ENST00000504430 MT1HL1P0DM35 61 aa0.8□□□□□ -2.28
NIPBL-204ENST00000504430 MT1AP04731 61 aa0.8□□□□□ -2.28
NIPBL-204ENST00000504430 MT1XP80297 61 aa0.8□□□□□ -2.28
NIPBL-204ENST00000504430 DSTQ03001 7570 aaKnown RBP0.79□□□□□ -2.28
NIPBL-204ENST00000504430 KRTAP19-2Q3LHN2 52 aa0.78□□□□□ -2.28
NIPBL-204ENST00000504430 MT1GP13640 62 aa0.77□□□□□ -2.29
NIPBL-204ENST00000504430 SPRR2BP35325 72 aa0.76□□□□□ -2.29
NIPBL-204ENST00000504430 SPRR2FQ96RM1 72 aa0.75□□□□□ -2.29
NIPBL-204ENST00000504430 MT1LQ93083 61 aa0.74□□□□□ -2.29
NIPBL-204ENST00000504430 SPRR2AP35326 72 aa0.72□□□□□ -2.29
NIPBL-204ENST00000504430 MT1EP04732 61 aa0.72□□□□□ -2.29
NIPBL-204ENST00000504430 SPRR2EP22531 72 aa0.72□□□□□ -2.29
NIPBL-204ENST00000504430 MT1BP07438 61 aa0.7□□□□□ -2.3
NIPBL-204ENST00000504430 MT1HP80294 61 aa0.7□□□□□ -2.3
NIPBL-204ENST00000504430 KRTAP19-8Q3LI54 63 aa0.7□□□□□ -2.3
NIPBL-204ENST00000504430 KRTAP19-7Q3SYF9 63 aa0.7□□□□□ -2.3
NIPBL-204ENST00000504430 MT2AP02795 61 aa0.67□□□□□ -2.3
NIPBL-204ENST00000504430 MT1FP04733 61 aa0.67□□□□□ -2.3
NIPBL-204ENST00000504430 KRTAP6-1Q3LI64 71 aa0.64□□□□□ -2.31
NIPBL-204ENST00000504430 MUC12Q9UKN1 5478 aa0.63□□□□□ -2.31
NIPBL-204ENST00000504430 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
NIPBL-204ENST00000504430 MT1MQ8N339 61 aa0.6□□□□□ -2.31
NIPBL-204ENST00000504430 KRTAP20-2Q3LI61 65 aa0.54□□□□□ -2.32
NIPBL-204ENST00000504430 PHGR1C9JFL3 82 aa0.54□□□□□ -2.32
NIPBL-204ENST00000504430 MT4P47944 62 aa0.54□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 10.1 ms