RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 KRTAP4-2Q9BYR5 136 aa1.28□□□□□ -2.21
NEDD4-204ENST00000503468 LCE1AQ5T7P2 110 aa1.27□□□□□ -2.21
NEDD4-204ENST00000503468 KRTAP2-2Q9BYT5 123 aa1.27□□□□□ -2.21
NEDD4-204ENST00000503468 AHNAKQ09666 5890 aaKnown RBP1.25□□□□□ -2.21
NEDD4-204ENST00000503468 GPR98Q8WXG9 6306 aa1.25□□□□□ -2.21
NEDD4-204ENST00000503468 KRTAP9-6A0A140TA67 174 aa1.25□□□□□ -2.21
NEDD4-204ENST00000503468 KRTAP9-7A8MTY7 169 aa1.25□□□□□ -2.21
NEDD4-204ENST00000503468 AHNAK2Q8IVF2 5795 aa1.24□□□□□ -2.21
NEDD4-204ENST00000503468 LCE4AQ5TA78 99 aa1.23□□□□□ -2.21
NEDD4-204ENST00000503468 KRTAP19-7Q3SYF9 63 aa1.22□□□□□ -2.21
NEDD4-204ENST00000503468 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.22□□□□□ -2.21
NEDD4-204ENST00000503468 LCE5AQ5TCM9 118 aa1.22□□□□□ -2.21
NEDD4-204ENST00000503468 SMR3BP02814 79 aaPredicted RBP1.22□□□□□ -2.21
NEDD4-204ENST00000503468 KRTAP4-8A0A0G2JLE6 195 aa1.21□□□□□ -2.22
NEDD4-204ENST00000503468 MT2AP02795 61 aa1.2□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP10-5P60370 271 aa1.2□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP19-5Q3LI72 72 aa1.18□□□□□ -2.22
NEDD4-204ENST00000503468 NEBP20929 6669 aa1.18□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP4-7Q9BYR0 210 aa1.18□□□□□ -2.22
NEDD4-204ENST00000503468 MT1HP80294 61 aa1.18□□□□□ -2.22
NEDD4-204ENST00000503468 MT1XP80297 61 aa1.17□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP5-8O75690 187 aa1.16□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP2-3P0C7H8 128 aa1.16□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP2-4Q9BYR9 128 aa1.16□□□□□ -2.22
NEDD4-204ENST00000503468 KRTAP2-1Q9BYU5 128 aa1.16□□□□□ -2.22
NEDD4-204ENST00000503468 MT1FP04733 61 aa1.15□□□□□ -2.23
NEDD4-204ENST00000503468 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
NEDD4-204ENST00000503468 SYNE1Q8NF91 8797 aaKnown RBP1.14□□□□□ -2.23
NEDD4-204ENST00000503468 MT1EP04732 61 aa1.14□□□□□ -2.23
NEDD4-204ENST00000503468 KRTAP10-7P60409 375 aaPredicted RBP1.14□□□□□ -2.23
NEDD4-204ENST00000503468 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
NEDD4-204ENST00000503468 MUC19Q7Z5P9 8384 aa1.13□□□□□ -2.23
NEDD4-204ENST00000503468 KRTAP12-3P60328 96 aa1.1□□□□□ -2.23
NEDD4-204ENST00000503468 LCE1DQ5T752 114 aa1.09□□□□□ -2.24
NEDD4-204ENST00000503468 KRTAP4-9Q9BYQ8 210 aa1.08□□□□□ -2.24
NEDD4-204ENST00000503468 KRTAP6-3Q3LI67 103 aa1.08□□□□□ -2.24
NEDD4-204ENST00000503468 MT1LQ93083 61 aa1.07□□□□□ -2.24
NEDD4-204ENST00000503468 KRTAP10-10P60014 251 aa1.07□□□□□ -2.24
NEDD4-204ENST00000503468 LCE1EQ5T753 118 aa1.05□□□□□ -2.24
NEDD4-204ENST00000503468 LCE3AQ5TA76 89 aa1.05□□□□□ -2.24
NEDD4-204ENST00000503468 KRTAP4-11Q9BYQ6 195 aa1.05□□□□□ -2.24
NEDD4-204ENST00000503468 KRTAP5-1Q6L8H4 278 aa1.05□□□□□ -2.24
NEDD4-204ENST00000503468 MT1AP04731 61 aa1.02□□□□□ -2.25
NEDD4-204ENST00000503468 KRTAP9-6A8MVA2 160 aa1.01□□□□□ -2.25
NEDD4-204ENST00000503468 LCE3CQ5T5A8 94 aa1□□□□□ -2.25
NEDD4-204ENST00000503468 MT1MQ8N339 61 aa1□□□□□ -2.25
NEDD4-204ENST00000503468 MT1GP13640 62 aa1□□□□□ -2.25
NEDD4-204ENST00000503468 KRTAP4-4Q9BYR3 166 aa0.98□□□□□ -2.25
NEDD4-204ENST00000503468 LCE1FQ5T754 118 aa0.97□□□□□ -2.25
NEDD4-204ENST00000503468 MACF1Q9UPN3 7388 aaKnown RBP0.96□□□□□ -2.26
NEDD4-204ENST00000503468 MT3P25713 68 aa0.94□□□□□ -2.26
NEDD4-204ENST00000503468 KRTAP12-4P60329 112 aa0.93□□□□□ -2.26
NEDD4-204ENST00000503468 KRTAP19-3Q7Z4W3 81 aa0.93□□□□□ -2.26
NEDD4-204ENST00000503468 KRTAP5-11Q6L8G4 156 aa0.93□□□□□ -2.26
NEDD4-204ENST00000503468 CRCT1Q9UGL9 99 aa0.92□□□□□ -2.26
NEDD4-204ENST00000503468 KRTAP20-1Q3LI63 56 aa0.91□□□□□ -2.26
NEDD4-204ENST00000503468 LCE1CQ5T751 118 aa0.91□□□□□ -2.26
NEDD4-204ENST00000503468 LCE1BQ5T7P3 118 aa0.91□□□□□ -2.26
NEDD4-204ENST00000503468 LCE3EQ5T5B0 92 aa0.88□□□□□ -2.27
NEDD4-204ENST00000503468 LCE3DQ9BYE3 92 aa0.85□□□□□ -2.27
NEDD4-204ENST00000503468 SYNE2Q8WXH0 6885 aaKnown RBP0.82□□□□□ -2.28
NEDD4-204ENST00000503468 FSIP2Q5CZC0 6907 aa0.82□□□□□ -2.28
NEDD4-204ENST00000503468 DSTQ03001 7570 aaKnown RBP0.82□□□□□ -2.28
NEDD4-204ENST00000503468 SPRR2AP35326 72 aa0.82□□□□□ -2.28
NEDD4-204ENST00000503468 SPRR2BP35325 72 aa0.81□□□□□ -2.28
NEDD4-204ENST00000503468 KRTAP4-3Q9BYR4 195 aa0.81□□□□□ -2.28
NEDD4-204ENST00000503468 SPRR2EP22531 72 aa0.8□□□□□ -2.28
NEDD4-204ENST00000503468 SPRR2DP22532 72 aa0.79□□□□□ -2.28
NEDD4-204ENST00000503468 SPRR2FQ96RM1 72 aa0.79□□□□□ -2.28
NEDD4-204ENST00000503468 KRTAP20-2Q3LI61 65 aa0.79□□□□□ -2.28
NEDD4-204ENST00000503468 PRM1P04553 51 aa0.78□□□□□ -2.28
NEDD4-204ENST00000503468 KRTAP21-2Q3LI59 83 aa0.76□□□□□ -2.29
NEDD4-204ENST00000503468 KRTAP6-2Q3LI66 62 aa0.71□□□□□ -2.3
NEDD4-204ENST00000503468 KRTAP6-1Q3LI64 71 aa0.69□□□□□ -2.3
NEDD4-204ENST00000503468 KRTAP21-1Q3LI58 79 aa0.63□□□□□ -2.31
NEDD4-204ENST00000503468 PHGR1C9JFL3 82 aa0.63□□□□□ -2.31
NEDD4-204ENST00000503468 MT4P47944 62 aa0.62□□□□□ -2.31
NEDD4-204ENST00000503468 MUC16Q8WXI7 14507 aa0.38□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 5.5 ms