RNA–Protein interactions for RNA: ENST00000503078.5

DDX41-202, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 2,375 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-202ENST00000503078 FSIP2Q5CZC0 6907 aa8.21□□□□□ -1.09
DDX41-202ENST00000503078 LCE2DQ5TA82 110 aaPredicted RBP8.17□□□□□ -1.1
DDX41-202ENST00000503078 FCGBPQ9Y6R7 5405 aaPredicted RBP7.96□□□□□ -1.14
DDX41-202ENST00000503078 LOC100996750A0A140TA64 210 aa7.93□□□□□ -1.14
DDX41-202ENST00000503078 KRTAP4-3Q9BYR4 195 aa7.91□□□□□ -1.14
DDX41-202ENST00000503078 MT1GP13640 62 aa7.86□□□□□ -1.15
DDX41-202ENST00000503078 MT1MQ8N339 61 aa7.81□□□□□ -1.16
DDX41-202ENST00000503078 KRTAP19-3Q7Z4W3 81 aa7.77□□□□□ -1.17
DDX41-202ENST00000503078 CRCT1Q9UGL9 99 aa7.66□□□□□ -1.18
DDX41-202ENST00000503078 MUC12Q9UKN1 5478 aa7.65□□□□□ -1.19
DDX41-202ENST00000503078 KRTAP12-4P60329 112 aa7.57□□□□□ -1.2
DDX41-202ENST00000503078 KRTAP9-2Q9BYQ4 174 aa7.57□□□□□ -1.2
DDX41-202ENST00000503078 SPRR2FQ96RM1 72 aa7.55□□□□□ -1.2
DDX41-202ENST00000503078 MACF1Q9UPN3 7388 aaKnown RBP7.49□□□□□ -1.21
DDX41-202ENST00000503078 LCE5AQ5TCM9 118 aa7.48□□□□□ -1.21
DDX41-202ENST00000503078 LCE3BQ5TA77 95 aa7.32□□□□□ -1.24
DDX41-202ENST00000503078 DSTQ03001 7570 aaKnown RBP7.32□□□□□ -1.24
DDX41-202ENST00000503078 KRTAP5-9P26371 169 aa7.24□□□□□ -1.25
DDX41-202ENST00000503078 SYNE2Q8WXH0 6885 aaKnown RBP7.24□□□□□ -1.25
DDX41-202ENST00000503078 MT1AP04731 61 aa7.2□□□□□ -1.26
DDX41-202ENST00000503078 KRTAP4-9Q9BYQ8 210 aa7.19□□□□□ -1.26
DDX41-202ENST00000503078 LCE1AQ5T7P2 110 aa7.15□□□□□ -1.27
DDX41-202ENST00000503078 KRTAP6-1Q3LI64 71 aa7.13□□□□□ -1.27
DDX41-202ENST00000503078 MDN1Q9NU22 5596 aa7.12□□□□□ -1.27
DDX41-202ENST00000503078 SYNE1Q8NF91 8797 aaKnown RBP7.04□□□□□ -1.28
DDX41-202ENST00000503078 LCE3DQ9BYE3 92 aa7□□□□□ -1.29
DDX41-202ENST00000503078 SPRR2EP22531 72 aa6.98□□□□□ -1.29
DDX41-202ENST00000503078 SPRR2BP35325 72 aa6.98□□□□□ -1.29
DDX41-202ENST00000503078 SPRR2AP35326 72 aa6.98□□□□□ -1.29
DDX41-202ENST00000503078 LCE3EQ5T5B0 92 aa6.94□□□□□ -1.3
DDX41-202ENST00000503078 KRTAP5-5Q701N2 237 aaPredicted RBP6.87□□□□□ -1.31
DDX41-202ENST00000503078 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.82□□□□□ -1.32
DDX41-202ENST00000503078 KRTAP6-3Q3LI67 103 aa6.8□□□□□ -1.32
DDX41-202ENST00000503078 KRTAP9-7A8MTY7 169 aa6.77□□□□□ -1.32
DDX41-202ENST00000503078 PRM1P04553 51 aa6.73□□□□□ -1.33
DDX41-202ENST00000503078 SPRR2DP22532 72 aa6.69□□□□□ -1.34
DDX41-202ENST00000503078 KRTAP9-6A0A140TA67 174 aa6.68□□□□□ -1.34
DDX41-202ENST00000503078 KRTAP9-4Q9BYQ2 154 aa6.62□□□□□ -1.35
DDX41-202ENST00000503078 KRTAP6-2Q3LI66 62 aa6.48□□□□□ -1.37
DDX41-202ENST00000503078 MT3P25713 68 aa6.33□□□□□ -1.4
DDX41-202ENST00000503078 NEBP20929 6669 aa6.26□□□□□ -1.41
DDX41-202ENST00000503078 KRTAP5-4Q6L8H1 288 aa6.19□□□□□ -1.42
DDX41-202ENST00000503078 OBSCNQ5VST9 7968 aa6.07□□□□□ -1.44
DDX41-202ENST00000503078 KRTAP2-2Q9BYT5 123 aa5.95□□□□□ -1.46
DDX41-202ENST00000503078 KRTAP4-6Q9BYQ5 205 aa5.91□□□□□ -1.46
DDX41-202ENST00000503078 LCE4AQ5TA78 99 aa5.88□□□□□ -1.47
DDX41-202ENST00000503078 MT4P47944 62 aa5.86□□□□□ -1.47
DDX41-202ENST00000503078 KRTAP20-2Q3LI61 65 aa5.78□□□□□ -1.48
DDX41-202ENST00000503078 KRTAP5-2Q701N4 177 aa5.72□□□□□ -1.49
DDX41-202ENST00000503078 LCE1DQ5T752 114 aa5.64□□□□□ -1.51
DDX41-202ENST00000503078 HMCN1Q96RW7 5635 aa5.64□□□□□ -1.51
DDX41-202ENST00000503078 KRTAP20-1Q3LI63 56 aa5.58□□□□□ -1.52
DDX41-202ENST00000503078 KRTAP5-3Q6L8H2 238 aa5.55□□□□□ -1.52
DDX41-202ENST00000503078 MUC5ACP98088 5654 aa5.35□□□□□ -1.55
DDX41-202ENST00000503078 LCE1EQ5T753 118 aa5.14□□□□□ -1.59
DDX41-202ENST00000503078 KRTAP5-10Q6L8G5 202 aa5.09□□□□□ -1.59
DDX41-202ENST00000503078 LCE1BQ5T7P3 118 aa5.05□□□□□ -1.6
DDX41-202ENST00000503078 KRTAP4-11Q9BYQ6 195 aa5.05□□□□□ -1.6
DDX41-202ENST00000503078 KRTAP5-1Q6L8H4 278 aa5□□□□□ -1.61
DDX41-202ENST00000503078 KRTAP4-2Q9BYR5 136 aa4.85□□□□□ -1.63
DDX41-202ENST00000503078 LCE1CQ5T751 118 aa4.83□□□□□ -1.64
DDX41-202ENST00000503078 KRTAP5-8O75690 187 aa4.68□□□□□ -1.66
DDX41-202ENST00000503078 AHNAK2Q8IVF2 5795 aa4.64□□□□□ -1.67
DDX41-202ENST00000503078 KRTAP5-7Q6L8G8 165 aa4.61□□□□□ -1.67
DDX41-202ENST00000503078 KRTAP21-2Q3LI59 83 aa4.6□□□□□ -1.67
DDX41-202ENST00000503078 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.59□□□□□ -1.67
DDX41-202ENST00000503078 KRTAP21-1Q3LI58 79 aa4.27□□□□□ -1.73
DDX41-202ENST00000503078 KRTAP5-11Q6L8G4 156 aa4.2□□□□□ -1.74
DDX41-202ENST00000503078 KRTAP4-4Q9BYR3 166 aa4.18□□□□□ -1.74
DDX41-202ENST00000503078 GPR98Q8WXG9 6306 aa4.06□□□□□ -1.76
DDX41-202ENST00000503078 MUC5BQ9HC84 5762 aaPredicted RBP4.05□□□□□ -1.76
DDX41-202ENST00000503078 KRTAP9-9Q9BYP9 154 aa4.03□□□□□ -1.76
DDX41-202ENST00000503078 MUC19Q7Z5P9 8384 aa3.99□□□□□ -1.77
DDX41-202ENST00000503078 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
DDX41-202ENST00000503078 LCE1FQ5T754 118 aa3.89□□□□□ -1.79
DDX41-202ENST00000503078 PHGR1C9JFL3 82 aa3.62□□□□□ -1.83
DDX41-202ENST00000503078 AHNAKQ09666 5890 aaKnown RBP3.29□□□□□ -1.88
DDX41-202ENST00000503078 MUC16Q8WXI7 14507 aa2.4□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 5.6 ms