RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 KRTAP23-1A1A580 65 aa4.38□□□□□ -1.71
MCF2L-231ENST00000494043 LCE3AQ5TA76 89 aa4.38□□□□□ -1.71
MCF2L-231ENST00000494043 KRTAP8-1Q8IUC2 63 aa4.35□□□□□ -1.71
MCF2L-231ENST00000494043 KRTAP6-3Q3LI67 103 aa4.33□□□□□ -1.72
MCF2L-231ENST00000494043 PP632Q6XCG6 107 aa4.3□□□□□ -1.72
MCF2L-231ENST00000494043 KTN1-AS1Q86SY8 53 aa4.3□□□□□ -1.72
MCF2L-231ENST00000494043 PRAC1Q96KF2 57 aa4.28□□□□□ -1.72
MCF2L-231ENST00000494043 KRTAP19-5Q3LI72 72 aa4.26□□□□□ -1.73
MCF2L-231ENST00000494043 KRTAP5-9P26371 169 aa4.25□□□□□ -1.73
MCF2L-231ENST00000494043 KRTAP19-7Q3SYF9 63 aa4.25□□□□□ -1.73
MCF2L-231ENST00000494043 SPRR2FQ96RM1 72 aa4.23□□□□□ -1.73
MCF2L-231ENST00000494043 KRTAP15-1Q3LI76 137 aa4.22□□□□□ -1.73
MCF2L-231ENST00000494043 KRTAP12-3P60328 96 aa4.21□□□□□ -1.74
MCF2L-231ENST00000494043 NEBP20929 6669 aa4.21□□□□□ -1.74
MCF2L-231ENST00000494043 MUC12Q9UKN1 5478 aa4.2□□□□□ -1.74
MCF2L-231ENST00000494043 MT1EP04732 61 aa4.19□□□□□ -1.74
MCF2L-231ENST00000494043 MDN1Q9NU22 5596 aa4.15□□□□□ -1.75
MCF2L-231ENST00000494043 MT1LQ93083 61 aa4.08□□□□□ -1.76
MCF2L-231ENST00000494043 LCE1AQ5T7P2 110 aa4.07□□□□□ -1.76
MCF2L-231ENST00000494043 SPRR2EP22531 72 aa4.06□□□□□ -1.76
MCF2L-231ENST00000494043 SPRR2BP35325 72 aa4.06□□□□□ -1.76
MCF2L-231ENST00000494043 SPRR2AP35326 72 aa4.06□□□□□ -1.76
MCF2L-231ENST00000494043 KRTAP19-3Q7Z4W3 81 aa4.06□□□□□ -1.76
MCF2L-231ENST00000494043 SVIPQ8NHG7 77 aa4.06□□□□□ -1.76
MCF2L-231ENST00000494043 MT1GP13640 62 aa4□□□□□ -1.77
MCF2L-231ENST00000494043 KRTAP20-1Q3LI63 56 aa3.97□□□□□ -1.77
MCF2L-231ENST00000494043 MT1MQ8N339 61 aa3.96□□□□□ -1.78
MCF2L-231ENST00000494043 SPRR2DP22532 72 aa3.92□□□□□ -1.78
MCF2L-231ENST00000494043 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
MCF2L-231ENST00000494043 KRTAP2-3P0C7H8 128 aa3.88□□□□□ -1.79
MCF2L-231ENST00000494043 KRTAP2-4Q9BYR9 128 aa3.88□□□□□ -1.79
MCF2L-231ENST00000494043 KRTAP4-3Q9BYR4 195 aa3.85□□□□□ -1.79
MCF2L-231ENST00000494043 KRTAP2-2Q9BYT5 123 aa3.76□□□□□ -1.81
MCF2L-231ENST00000494043 KRTAP2-1Q9BYU5 128 aa3.76□□□□□ -1.81
MCF2L-231ENST00000494043 SPRR5A0A1B0GTR4 108 aa3.74□□□□□ -1.81
MCF2L-231ENST00000494043 DSTQ03001 7570 aaKnown RBP3.72□□□□□ -1.81
MCF2L-231ENST00000494043 KRTAP9-6A8MVA2 160 aa3.7□□□□□ -1.82
MCF2L-231ENST00000494043 KRTAP5-5Q701N2 237 aaPredicted RBP3.59□□□□□ -1.83
MCF2L-231ENST00000494043 LUZP6Q538Z0 58 aa3.51□□□□□ -1.85
MCF2L-231ENST00000494043 KRTAP5-4Q6L8H1 288 aa3.51□□□□□ -1.85
MCF2L-231ENST00000494043 MT1AP04731 61 aa3.47□□□□□ -1.85
MCF2L-231ENST00000494043 KRTAP6-1Q3LI64 71 aa3.43□□□□□ -1.86
MCF2L-231ENST00000494043 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
MCF2L-231ENST00000494043 MT4P47944 62 aa3.39□□□□□ -1.87
MCF2L-231ENST00000494043 KRTAP12-4P60329 112 aa3.37□□□□□ -1.87
MCF2L-231ENST00000494043 SYNE1Q8NF91 8797 aaKnown RBP3.37□□□□□ -1.87
MCF2L-231ENST00000494043 GPR98Q8WXG9 6306 aa3.36□□□□□ -1.87
MCF2L-231ENST00000494043 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.32□□□□□ -1.88
MCF2L-231ENST00000494043 NDUFAF8A1L188 74 aa3.29□□□□□ -1.88
MCF2L-231ENST00000494043 KRTAP20-2Q3LI61 65 aa3.29□□□□□ -1.88
MCF2L-231ENST00000494043 MT3P25713 68 aa3.26□□□□□ -1.89
MCF2L-231ENST00000494043 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
MCF2L-231ENST00000494043 AHNAK2Q8IVF2 5795 aa3.21□□□□□ -1.89
MCF2L-231ENST00000494043 KRTAP6-2Q3LI66 62 aa3.19□□□□□ -1.9
MCF2L-231ENST00000494043 LCE1EQ5T753 118 aa3.18□□□□□ -1.9
MCF2L-231ENST00000494043 A0A0A0MQY5 61 aa3.17□□□□□ -1.9
MCF2L-231ENST00000494043 KRTAP5-2Q701N4 177 aa3.16□□□□□ -1.9
MCF2L-231ENST00000494043 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
MCF2L-231ENST00000494043 KRTAP5-7Q6L8G8 165 aa3.03□□□□□ -1.92
MCF2L-231ENST00000494043 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
MCF2L-231ENST00000494043 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
MCF2L-231ENST00000494043 OBSCNQ5VST9 7968 aa2.83□□□□□ -1.96
MCF2L-231ENST00000494043 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
MCF2L-231ENST00000494043 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
MCF2L-231ENST00000494043 KRTAP5-8O75690 187 aa2.78□□□□□ -1.96
MCF2L-231ENST00000494043 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
MCF2L-231ENST00000494043 INE1O15225 51 aa2.72□□□□□ -1.97
MCF2L-231ENST00000494043 MUC5ACP98088 5654 aa2.69□□□□□ -1.98
MCF2L-231ENST00000494043 MUC5BQ9HC84 5762 aaPredicted RBP2.68□□□□□ -1.98
MCF2L-231ENST00000494043 AHNAKQ09666 5890 aaKnown RBP2.67□□□□□ -1.98
MCF2L-231ENST00000494043 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
MCF2L-231ENST00000494043 LCE1BQ5T7P3 118 aa2.59□□□□□ -1.99
MCF2L-231ENST00000494043 PRM1P04553 51 aa2.37□□□□□ -2.03
MCF2L-231ENST00000494043 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
MCF2L-231ENST00000494043 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
MCF2L-231ENST00000494043 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
MCF2L-231ENST00000494043 KRTAP21-1Q3LI58 79 aa1.42□□□□□ -2.18
MCF2L-231ENST00000494043 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 11 ms