RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 UQCR11O14957 56 aa5.29□□□□□ -1.56
UPF3A-210ENST00000493727 A0A0D9SG42 100 aa5.27□□□□□ -1.57
UPF3A-210ENST00000493727 A6NED7 52 aa5.23□□□□□ -1.57
UPF3A-210ENST00000493727 PLAC4Q8WY50 150 aa5.23□□□□□ -1.57
UPF3A-210ENST00000493727 MIR22HGQ0VDD5 57 aa5.22□□□□□ -1.57
UPF3A-210ENST00000493727 KRTAP2-3P0C7H8 128 aa5.21□□□□□ -1.58
UPF3A-210ENST00000493727 KRTAP2-4Q9BYR9 128 aa5.21□□□□□ -1.58
UPF3A-210ENST00000493727 A8MU10 97 aa5.2□□□□□ -1.58
UPF3A-210ENST00000493727 SPINT4Q6UDR6 99 aa5.17□□□□□ -1.58
UPF3A-210ENST00000493727 KRTAP12-1P59990 96 aa5.11□□□□□ -1.59
UPF3A-210ENST00000493727 CAMK2N1Q7Z7J9 78 aa5.1□□□□□ -1.59
UPF3A-210ENST00000493727 KRTAP12-2P59991 146 aa5.09□□□□□ -1.59
UPF3A-210ENST00000493727 K7ERS5 55 aa5.08□□□□□ -1.6
UPF3A-210ENST00000493727 PRO2289Q9P1D8 64 aa5.08□□□□□ -1.6
UPF3A-210ENST00000493727 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2EP22531 72 aa5.06□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2BP35325 72 aa5.06□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2AP35326 72 aa5.06□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2FQ96RM1 72 aa5.05□□□□□ -1.6
UPF3A-210ENST00000493727 KRTAP2-1Q9BYU5 128 aa5.02□□□□□ -1.61
UPF3A-210ENST00000493727 MT1XP80297 61 aa5□□□□□ -1.61
UPF3A-210ENST00000493727 BRK1Q8WUW1 75 aa4.99□□□□□ -1.61
UPF3A-210ENST00000493727 LCE3EQ5T5B0 92 aa4.98□□□□□ -1.61
UPF3A-210ENST00000493727 KRTAP8-1Q8IUC2 63 aa4.93□□□□□ -1.62
UPF3A-210ENST00000493727 GPR98Q8WXG9 6306 aa4.92□□□□□ -1.62
UPF3A-210ENST00000493727 KRTAP5-1Q6L8H4 278 aa4.92□□□□□ -1.62
UPF3A-210ENST00000493727 SPRR2DP22532 72 aa4.89□□□□□ -1.63
UPF3A-210ENST00000493727 C10orf95Q9H7T3 257 aa4.84□□□□□ -1.63
UPF3A-210ENST00000493727 TNP1P09430 55 aa4.79□□□□□ -1.64
UPF3A-210ENST00000493727 ROMO1P60602 79 aa4.78□□□□□ -1.64
UPF3A-210ENST00000493727 DSTQ03001 7570 aaKnown RBP4.78□□□□□ -1.64
UPF3A-210ENST00000493727 KRTAP25-1Q3LHN0 102 aa4.72□□□□□ -1.65
UPF3A-210ENST00000493727 PRO0628Q9UI54 55 aa4.72□□□□□ -1.65
UPF3A-210ENST00000493727 PMAIP1Q13794 54 aa4.7□□□□□ -1.66
UPF3A-210ENST00000493727 KRTAP4-4Q9BYR3 166 aa4.69□□□□□ -1.66
UPF3A-210ENST00000493727 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
UPF3A-210ENST00000493727 LCE3AQ5TA76 89 aa4.6□□□□□ -1.67
UPF3A-210ENST00000493727 PP632Q6XCG6 107 aa4.51□□□□□ -1.69
UPF3A-210ENST00000493727 KRTAP19-5Q3LI72 72 aa4.48□□□□□ -1.69
UPF3A-210ENST00000493727 HMCN1Q96RW7 5635 aa4.47□□□□□ -1.69
UPF3A-210ENST00000493727 KRTAP19-7Q3SYF9 63 aa4.45□□□□□ -1.7
UPF3A-210ENST00000493727 AHNAK2Q8IVF2 5795 aa4.45□□□□□ -1.7
UPF3A-210ENST00000493727 KRTAP12-3P60328 96 aa4.43□□□□□ -1.7
UPF3A-210ENST00000493727 KRTAP19-3Q7Z4W3 81 aa4.43□□□□□ -1.7
UPF3A-210ENST00000493727 KTN1-AS1Q86SY8 53 aa4.43□□□□□ -1.7
UPF3A-210ENST00000493727 MT1EP04732 61 aa4.41□□□□□ -1.7
UPF3A-210ENST00000493727 MT1GP13640 62 aa4.33□□□□□ -1.72
UPF3A-210ENST00000493727 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
UPF3A-210ENST00000493727 OBSCNQ5VST9 7968 aa4.32□□□□□ -1.72
UPF3A-210ENST00000493727 MT4P47944 62 aa4.31□□□□□ -1.72
UPF3A-210ENST00000493727 MT1LQ93083 61 aa4.28□□□□□ -1.72
UPF3A-210ENST00000493727 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
UPF3A-210ENST00000493727 MT1MQ8N339 61 aa4.21□□□□□ -1.74
UPF3A-210ENST00000493727 KRTAP5-7Q6L8G8 165 aa4.2□□□□□ -1.74
UPF3A-210ENST00000493727 KRTAP5-5Q701N2 237 aaPredicted RBP4.19□□□□□ -1.74
UPF3A-210ENST00000493727 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
UPF3A-210ENST00000493727 KRTAP20-2Q3LI61 65 aa3.98□□□□□ -1.77
UPF3A-210ENST00000493727 SPRR5A0A1B0GTR4 108 aa3.95□□□□□ -1.78
UPF3A-210ENST00000493727 LCE1CQ5T751 118 aa3.9□□□□□ -1.79
UPF3A-210ENST00000493727 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.79
UPF3A-210ENST00000493727 SYNE1Q8NF91 8797 aaKnown RBP3.88□□□□□ -1.79
UPF3A-210ENST00000493727 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
UPF3A-210ENST00000493727 KRTAP5-2Q701N4 177 aa3.78□□□□□ -1.8
UPF3A-210ENST00000493727 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
UPF3A-210ENST00000493727 MUC5BQ9HC84 5762 aaPredicted RBP3.72□□□□□ -1.81
UPF3A-210ENST00000493727 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
UPF3A-210ENST00000493727 LUZP6Q538Z0 58 aa3.7□□□□□ -1.82
UPF3A-210ENST00000493727 MT1AP04731 61 aa3.65□□□□□ -1.83
UPF3A-210ENST00000493727 KRTAP5-8O75690 187 aa3.62□□□□□ -1.83
UPF3A-210ENST00000493727 KRTAP6-1Q3LI64 71 aa3.61□□□□□ -1.83
UPF3A-210ENST00000493727 KRTAP6-2Q3LI66 62 aa3.42□□□□□ -1.86
UPF3A-210ENST00000493727 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
UPF3A-210ENST00000493727 INE1O15225 51 aa2.8□□□□□ -1.96
UPF3A-210ENST00000493727 KRTAP21-2Q3LI59 83 aa2.78□□□□□ -1.96
UPF3A-210ENST00000493727 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
UPF3A-210ENST00000493727 PRM1P04553 51 aa2.47□□□□□ -2.01
UPF3A-210ENST00000493727 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
UPF3A-210ENST00000493727 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 6.4 ms