RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SPRR2BP35325 72 aa0.92□□□□□ -2.26
BRCA1-220ENST00000492859 MYO9AB2RTY4 2548 aa0.92□□□□□ -2.26
BRCA1-220ENST00000492859 SYNE1Q8NF91 8797 aaKnown RBP0.91□□□□□ -2.26
BRCA1-220ENST00000492859 KRTAP21-1Q3LI58 79 aa0.91□□□□□ -2.26
BRCA1-220ENST00000492859 DNAH17Q9UFH2 4485 aa0.91□□□□□ -2.26
BRCA1-220ENST00000492859 PKHD1P08F94 4074 aa0.9□□□□□ -2.26
BRCA1-220ENST00000492859 FAT1Q14517 4588 aa0.9□□□□□ -2.27
BRCA1-220ENST00000492859 LPAP08519 4548 aa0.9□□□□□ -2.27
BRCA1-220ENST00000492859 DNAH14Q0VDD8 3507 aa0.9□□□□□ -2.27
BRCA1-220ENST00000492859 WDFY3Q8IZQ1 3526 aa0.89□□□□□ -2.27
BRCA1-220ENST00000492859 DNAH5Q8TE73 4624 aa0.88□□□□□ -2.27
BRCA1-220ENST00000492859 SPRR2AP35326 72 aa0.88□□□□□ -2.27
BRCA1-220ENST00000492859 GPR98Q8WXG9 6306 aa0.86□□□□□ -2.27
BRCA1-220ENST00000492859 SPRR2FQ96RM1 72 aa0.86□□□□□ -2.27
BRCA1-220ENST00000492859 DYNC1H1Q14204 4646 aaKnown RBP0.85□□□□□ -2.27
BRCA1-220ENST00000492859 MUC5BQ9HC84 5762 aaPredicted RBP0.83□□□□□ -2.28
BRCA1-220ENST00000492859 SPRR2EP22531 72 aa0.83□□□□□ -2.28
BRCA1-220ENST00000492859 AHNAK2Q8IVF2 5795 aa0.82□□□□□ -2.28
BRCA1-220ENST00000492859 KRTAP4-1Q9BYQ7 146 aa0.81□□□□□ -2.28
BRCA1-220ENST00000492859 CRCT1Q9UGL9 99 aa0.8□□□□□ -2.28
BRCA1-220ENST00000492859 MUC17Q685J3 4493 aa0.8□□□□□ -2.28
BRCA1-220ENST00000492859 MT1EP04732 61 aa0.78□□□□□ -2.29
BRCA1-220ENST00000492859 LRP1BQ9NZR2 4599 aa0.77□□□□□ -2.29
BRCA1-220ENST00000492859 CDH23Q9H251 3354 aa0.76□□□□□ -2.29
BRCA1-220ENST00000492859 SPRR2GQ9BYE4 73 aa0.76□□□□□ -2.29
BRCA1-220ENST00000492859 STARD9Q9P2P6 4700 aa0.76□□□□□ -2.29
BRCA1-220ENST00000492859 AHNAKQ09666 5890 aaKnown RBP0.75□□□□□ -2.29
BRCA1-220ENST00000492859 MT1LQ93083 61 aa0.74□□□□□ -2.29
BRCA1-220ENST00000492859 HERC1Q15751 4861 aa0.73□□□□□ -2.29
BRCA1-220ENST00000492859 FCGBPQ9Y6R7 5405 aaPredicted RBP0.71□□□□□ -2.3
BRCA1-220ENST00000492859 MT1HP80294 61 aa0.7□□□□□ -2.3
BRCA1-220ENST00000492859 MT1XP80297 61 aa0.7□□□□□ -2.3
BRCA1-220ENST00000492859 LRP2P98164 4655 aa0.66□□□□□ -2.3
BRCA1-220ENST00000492859 HMCN2Q8NDA2 5059 aa0.65□□□□□ -2.31
BRCA1-220ENST00000492859 KRTAP19-8Q3LI54 63 aa0.64□□□□□ -2.31
BRCA1-220ENST00000492859 KRTAP5-10Q6L8G5 202 aa0.62□□□□□ -2.31
BRCA1-220ENST00000492859 KRTAP19-7Q3SYF9 63 aa0.61□□□□□ -2.31
BRCA1-220ENST00000492859 MT1GP13640 62 aa0.6□□□□□ -2.31
BRCA1-220ENST00000492859 MACF1Q9UPN3 7388 aaKnown RBP0.6□□□□□ -2.31
BRCA1-220ENST00000492859 KRTAP19-2Q3LHN2 52 aa0.59□□□□□ -2.31
BRCA1-220ENST00000492859 MUC2Q02817 5179 aa0.59□□□□□ -2.32
BRCA1-220ENST00000492859 MUC5ACP98088 5654 aa0.55□□□□□ -2.32
BRCA1-220ENST00000492859 MT1BP07438 61 aa0.54□□□□□ -2.32
BRCA1-220ENST00000492859 SSPOA2VEC9 5147 aa0.54□□□□□ -2.32
BRCA1-220ENST00000492859 KRTAP6-1Q3LI64 71 aa0.53□□□□□ -2.32
BRCA1-220ENST00000492859 MDN1Q9NU22 5596 aa0.53□□□□□ -2.32
BRCA1-220ENST00000492859 FAT4Q6V0I7 4981 aa0.53□□□□□ -2.32
BRCA1-220ENST00000492859 USH2AO75445 5202 aa0.52□□□□□ -2.33
BRCA1-220ENST00000492859 PCLOQ9Y6V0 5065 aa0.52□□□□□ -2.33
BRCA1-220ENST00000492859 KMT2CQ8NEZ4 4911 aaKnown RBP0.5□□□□□ -2.33
BRCA1-220ENST00000492859 DNHD1Q96M86 4753 aa0.5□□□□□ -2.33
BRCA1-220ENST00000492859 UBR4Q5T4S7 5183 aa0.49□□□□□ -2.33
BRCA1-220ENST00000492859 MT1MQ8N339 61 aa0.48□□□□□ -2.33
BRCA1-220ENST00000492859 MT2AP02795 61 aa0.47□□□□□ -2.33
BRCA1-220ENST00000492859 RYR1P21817 5038 aa0.46□□□□□ -2.34
BRCA1-220ENST00000492859 SYNE2Q8WXH0 6885 aaKnown RBP0.46□□□□□ -2.34
BRCA1-220ENST00000492859 RYR3Q15413 4870 aa0.44□□□□□ -2.34
BRCA1-220ENST00000492859 HYDINQ4G0P3 5121 aa0.44□□□□□ -2.34
BRCA1-220ENST00000492859 FSIP2Q5CZC0 6907 aa0.44□□□□□ -2.34
BRCA1-220ENST00000492859 HERC2O95714 4834 aa0.43□□□□□ -2.34
BRCA1-220ENST00000492859 EPPK1P58107 5090 aaKnown RBP0.43□□□□□ -2.34
BRCA1-220ENST00000492859 KIAA1109Q2LD37 5005 aa0.42□□□□□ -2.34
BRCA1-220ENST00000492859 NEBP20929 6669 aa0.42□□□□□ -2.34
BRCA1-220ENST00000492859 MUC16Q8WXI7 14507 aa0.41□□□□□ -2.34
BRCA1-220ENST00000492859 PHGR1C9JFL3 82 aa0.41□□□□□ -2.34
BRCA1-220ENST00000492859 BIRC6Q9NR09 4857 aa0.4□□□□□ -2.35
BRCA1-220ENST00000492859 KMT2DO14686 5537 aa0.38□□□□□ -2.35
BRCA1-220ENST00000492859 RYR2Q92736 4967 aa0.38□□□□□ -2.35
BRCA1-220ENST00000492859 ABCA13Q86UQ4 5058 aa0.38□□□□□ -2.35
BRCA1-220ENST00000492859 MT1FP04733 61 aa0.37□□□□□ -2.35
BRCA1-220ENST00000492859 DSTQ03001 7570 aaKnown RBP0.35□□□□□ -2.35
BRCA1-220ENST00000492859 MT1HL1P0DM35 61 aa0.34□□□□□ -2.36
BRCA1-220ENST00000492859 RNF213Q63HN8 5207 aa0.34□□□□□ -2.36
BRCA1-220ENST00000492859 MUC12Q9UKN1 5478 aa0.27□□□□□ -2.37
BRCA1-220ENST00000492859 KRTAP20-1Q3LI63 56 aa0.22□□□□□ -2.37
BRCA1-220ENST00000492859 MT4P47944 62 aa0.12□□□□□ -2.39
BRCA1-220ENST00000492859 KRTAP20-2Q3LI61 65 aa0.12□□□□□ -2.39
BRCA1-220ENST00000492859 KRTAP19-6Q3LI70 58 aa0.09□□□□□ -2.4
Retrieved 78 of 20,778 RNA–protein pairs in 83.1 ms