RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 KRTAP12-3P60328 96 aa5.09□□□□□ -1.59
C9orf3-221ENST00000489562 SPRR2EP22531 72 aa5.06□□□□□ -1.6
C9orf3-221ENST00000489562 SPRR2BP35325 72 aa5.06□□□□□ -1.6
C9orf3-221ENST00000489562 SPRR2AP35326 72 aa5.06□□□□□ -1.6
C9orf3-221ENST00000489562 LCE1AQ5T7P2 110 aa5.05□□□□□ -1.6
C9orf3-221ENST00000489562 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
C9orf3-221ENST00000489562 KRTAP2-2Q9BYT5 123 aa5□□□□□ -1.61
C9orf3-221ENST00000489562 KRTAP2-1Q9BYU5 128 aa5□□□□□ -1.61
C9orf3-221ENST00000489562 KRTAP19-3Q7Z4W3 81 aa4.99□□□□□ -1.61
C9orf3-221ENST00000489562 MT1LQ93083 61 aa4.97□□□□□ -1.61
C9orf3-221ENST00000489562 KTN1-AS1Q86SY8 53 aa4.95□□□□□ -1.62
C9orf3-221ENST00000489562 MT1GP13640 62 aa4.94□□□□□ -1.62
C9orf3-221ENST00000489562 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
C9orf3-221ENST00000489562 KRTAP15-1Q3LI76 137 aa4.92□□□□□ -1.62
C9orf3-221ENST00000489562 KRTAP19-4Q3LI73 84 aa4.91□□□□□ -1.62
C9orf3-221ENST00000489562 PRAC1Q96KF2 57 aa4.91□□□□□ -1.62
C9orf3-221ENST00000489562 SPRR2DP22532 72 aa4.89□□□□□ -1.63
C9orf3-221ENST00000489562 MT1MQ8N339 61 aa4.83□□□□□ -1.64
C9orf3-221ENST00000489562 LCE3CQ5T5A8 94 aa4.73□□□□□ -1.65
C9orf3-221ENST00000489562 LCE3BQ5TA77 95 aa4.71□□□□□ -1.66
C9orf3-221ENST00000489562 KRTAP4-7Q9BYR0 210 aa4.7□□□□□ -1.66
C9orf3-221ENST00000489562 SVIPQ8NHG7 77 aa4.67□□□□□ -1.66
C9orf3-221ENST00000489562 KRTAP4-3Q9BYR4 195 aa4.66□□□□□ -1.66
C9orf3-221ENST00000489562 DSTQ03001 7570 aaKnown RBP4.58□□□□□ -1.68
C9orf3-221ENST00000489562 KRTAP4-9Q9BYQ8 210 aa4.48□□□□□ -1.69
C9orf3-221ENST00000489562 LOC100996750A0A140TA64 210 aa4.42□□□□□ -1.7
C9orf3-221ENST00000489562 SPRR5A0A1B0GTR4 108 aa4.41□□□□□ -1.7
C9orf3-221ENST00000489562 KRTAP9-6A8MVA2 160 aa4.41□□□□□ -1.7
C9orf3-221ENST00000489562 KRTAP5-5Q701N2 237 aaPredicted RBP4.39□□□□□ -1.71
C9orf3-221ENST00000489562 LCE4AQ5TA78 99 aa4.37□□□□□ -1.71
C9orf3-221ENST00000489562 KRTAP5-4Q6L8H1 288 aa4.36□□□□□ -1.71
C9orf3-221ENST00000489562 LCE1DQ5T752 114 aa4.33□□□□□ -1.72
C9orf3-221ENST00000489562 KRTAP5-10Q6L8G5 202 aa4.3□□□□□ -1.72
C9orf3-221ENST00000489562 AHNAK2Q8IVF2 5795 aa4.3□□□□□ -1.72
C9orf3-221ENST00000489562 HMCN1Q96RW7 5635 aa4.27□□□□□ -1.73
C9orf3-221ENST00000489562 MT1AP04731 61 aa4.25□□□□□ -1.73
C9orf3-221ENST00000489562 MT4P47944 62 aa4.22□□□□□ -1.73
C9orf3-221ENST00000489562 KRTAP5-7Q6L8G8 165 aa4.22□□□□□ -1.73
C9orf3-221ENST00000489562 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
C9orf3-221ENST00000489562 H3BS24 57 aa4.19□□□□□ -1.74
C9orf3-221ENST00000489562 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
C9orf3-221ENST00000489562 LUZP6Q538Z0 58 aa4.15□□□□□ -1.75
C9orf3-221ENST00000489562 KRTAP4-6Q9BYQ5 205 aa4.13□□□□□ -1.75
C9orf3-221ENST00000489562 KRTAP20-2Q3LI61 65 aa4.07□□□□□ -1.76
C9orf3-221ENST00000489562 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
C9orf3-221ENST00000489562 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
C9orf3-221ENST00000489562 SYNE1Q8NF91 8797 aaKnown RBP4.03□□□□□ -1.76
C9orf3-221ENST00000489562 KRTAP5-2Q701N4 177 aa3.9□□□□□ -1.79
C9orf3-221ENST00000489562 KRTAP6-2Q3LI66 62 aa3.89□□□□□ -1.79
C9orf3-221ENST00000489562 MT3P25713 68 aa3.87□□□□□ -1.79
C9orf3-221ENST00000489562 AHNAKQ09666 5890 aaKnown RBP3.82□□□□□ -1.8
C9orf3-221ENST00000489562 NDUFAF8A1L188 74 aa3.74□□□□□ -1.81
C9orf3-221ENST00000489562 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
C9orf3-221ENST00000489562 MUC5BQ9HC84 5762 aaPredicted RBP3.67□□□□□ -1.82
C9orf3-221ENST00000489562 KRTAP4-11Q9BYQ6 195 aa3.63□□□□□ -1.83
C9orf3-221ENST00000489562 KRTAP5-8O75690 187 aa3.53□□□□□ -1.84
C9orf3-221ENST00000489562 LCE3DQ9BYE3 92 aa3.51□□□□□ -1.85
C9orf3-221ENST00000489562 OBSCNQ5VST9 7968 aa3.48□□□□□ -1.85
C9orf3-221ENST00000489562 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
C9orf3-221ENST00000489562 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
C9orf3-221ENST00000489562 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.87
C9orf3-221ENST00000489562 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
C9orf3-221ENST00000489562 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.87
C9orf3-221ENST00000489562 A0A0A0MQY5 61 aa3.27□□□□□ -1.89
C9orf3-221ENST00000489562 LCE1CQ5T751 118 aa3.2□□□□□ -1.9
C9orf3-221ENST00000489562 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
C9orf3-221ENST00000489562 KRTAP4-2Q9BYR5 136 aa3.19□□□□□ -1.9
C9orf3-221ENST00000489562 INE1O15225 51 aa3.15□□□□□ -1.91
C9orf3-221ENST00000489562 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.98□□□□□ -1.93
C9orf3-221ENST00000489562 KRTAP5-11Q6L8G4 156 aa2.86□□□□□ -1.95
C9orf3-221ENST00000489562 PRM1P04553 51 aa2.77□□□□□ -1.97
C9orf3-221ENST00000489562 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
C9orf3-221ENST00000489562 LCE1FQ5T754 118 aa2.69□□□□□ -1.98
C9orf3-221ENST00000489562 PHGR1C9JFL3 82 aa2.54□□□□□ -2
C9orf3-221ENST00000489562 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
C9orf3-221ENST00000489562 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
C9orf3-221ENST00000489562 KRTAP21-1Q3LI58 79 aa1.96□□□□□ -2.1
C9orf3-221ENST00000489562 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 95.5 ms