RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 EPPK1P58107 5090 aaKnown RBP5.35□□□□□ -1.55
NPHP4-209ENST00000489180 MT4P47944 62 aa5.34□□□□□ -1.55
NPHP4-209ENST00000489180 MT3P25713 68 aa5.32□□□□□ -1.56
NPHP4-209ENST00000489180 ABCA13Q86UQ4 5058 aa5.28□□□□□ -1.56
NPHP4-209ENST00000489180 KRTAP19-6Q3LI70 58 aa5.26□□□□□ -1.57
NPHP4-209ENST00000489180 KRTAP4-9Q9BYQ8 210 aa5.2□□□□□ -1.58
NPHP4-209ENST00000489180 LCE1BQ5T7P3 118 aa5.19□□□□□ -1.58
NPHP4-209ENST00000489180 KRTAP19-7Q3SYF9 63 aa5.18□□□□□ -1.58
NPHP4-209ENST00000489180 LCE1DQ5T752 114 aa5.16□□□□□ -1.58
NPHP4-209ENST00000489180 KRTAP9-2Q9BYQ4 174 aa5.12□□□□□ -1.59
NPHP4-209ENST00000489180 HMCN2Q8NDA2 5059 aa5.1□□□□□ -1.59
NPHP4-209ENST00000489180 FAT4Q6V0I7 4981 aa5.09□□□□□ -1.59
NPHP4-209ENST00000489180 SYNE1Q8NF91 8797 aaKnown RBP5.08□□□□□ -1.6
NPHP4-209ENST00000489180 FSIP2Q5CZC0 6907 aa5.08□□□□□ -1.6
NPHP4-209ENST00000489180 UBR4Q5T4S7 5183 aa5.06□□□□□ -1.6
NPHP4-209ENST00000489180 KRTAP2-3P0C7H8 128 aa5.05□□□□□ -1.6
NPHP4-209ENST00000489180 KRTAP2-4Q9BYR9 128 aa5.05□□□□□ -1.6
NPHP4-209ENST00000489180 KRTAP2-1Q9BYU5 128 aa5.05□□□□□ -1.6
NPHP4-209ENST00000489180 RNF213Q63HN8 5207 aa5.04□□□□□ -1.6
NPHP4-209ENST00000489180 MT1AP04731 61 aa5.04□□□□□ -1.6
NPHP4-209ENST00000489180 LCE2AQ5TA79 106 aaPredicted RBP5.03□□□□□ -1.6
NPHP4-209ENST00000489180 SYNE2Q8WXH0 6885 aaKnown RBP4.97□□□□□ -1.61
NPHP4-209ENST00000489180 KRTAP9-6A8MVA2 160 aa4.9□□□□□ -1.62
NPHP4-209ENST00000489180 MUC2Q02817 5179 aa4.88□□□□□ -1.63
NPHP4-209ENST00000489180 KRTAP6-1Q3LI64 71 aa4.84□□□□□ -1.64
NPHP4-209ENST00000489180 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
NPHP4-209ENST00000489180 KRTAP6-2Q3LI66 62 aa4.79□□□□□ -1.64
NPHP4-209ENST00000489180 KRTAP9-6A0A140TA67 174 aa4.78□□□□□ -1.64
NPHP4-209ENST00000489180 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
NPHP4-209ENST00000489180 KRTAP9-4Q9BYQ2 154 aa4.67□□□□□ -1.66
NPHP4-209ENST00000489180 KRTAP9-7A8MTY7 169 aa4.67□□□□□ -1.66
NPHP4-209ENST00000489180 LCE1AQ5T7P2 110 aa4.63□□□□□ -1.67
NPHP4-209ENST00000489180 KRTAP20-1Q3LI63 56 aa4.6□□□□□ -1.67
NPHP4-209ENST00000489180 KRTAP6-3Q3LI67 103 aa4.56□□□□□ -1.68
NPHP4-209ENST00000489180 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.43□□□□□ -1.7
NPHP4-209ENST00000489180 LCE4AQ5TA78 99 aa4.42□□□□□ -1.7
NPHP4-209ENST00000489180 FCGBPQ9Y6R7 5405 aaPredicted RBP4.4□□□□□ -1.7
NPHP4-209ENST00000489180 USH2AO75445 5202 aa4.38□□□□□ -1.71
NPHP4-209ENST00000489180 LCE1CQ5T751 118 aa4.37□□□□□ -1.71
NPHP4-209ENST00000489180 LCE1EQ5T753 118 aa4.37□□□□□ -1.71
NPHP4-209ENST00000489180 LCE1FQ5T754 118 aa4.37□□□□□ -1.71
NPHP4-209ENST00000489180 KRTAP2-2Q9BYT5 123 aa4.32□□□□□ -1.72
NPHP4-209ENST00000489180 KMT2DO14686 5537 aa4.31□□□□□ -1.72
NPHP4-209ENST00000489180 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
NPHP4-209ENST00000489180 KRTAP4-11Q9BYQ6 195 aa4.04□□□□□ -1.76
NPHP4-209ENST00000489180 SSPOA2VEC9 5147 aa4.01□□□□□ -1.77
NPHP4-209ENST00000489180 MACF1Q9UPN3 7388 aaKnown RBP3.97□□□□□ -1.77
NPHP4-209ENST00000489180 KRTAP4-6Q9BYQ5 205 aa3.92□□□□□ -1.78
NPHP4-209ENST00000489180 KRTAP5-9P26371 169 aa3.9□□□□□ -1.79
NPHP4-209ENST00000489180 KRTAP9-9Q9BYP9 154 aa3.87□□□□□ -1.79
NPHP4-209ENST00000489180 NEBP20929 6669 aa3.85□□□□□ -1.79
NPHP4-209ENST00000489180 MUC12Q9UKN1 5478 aa3.85□□□□□ -1.79
NPHP4-209ENST00000489180 KRTAP20-2Q3LI61 65 aa3.78□□□□□ -1.8
NPHP4-209ENST00000489180 KRTAP4-4Q9BYR3 166 aa3.73□□□□□ -1.81
NPHP4-209ENST00000489180 MUC19Q7Z5P9 8384 aa3.68□□□□□ -1.82
NPHP4-209ENST00000489180 KRTAP5-5Q701N2 237 aaPredicted RBP3.66□□□□□ -1.82
NPHP4-209ENST00000489180 MDN1Q9NU22 5596 aa3.65□□□□□ -1.82
NPHP4-209ENST00000489180 KRTAP4-12Q9BQ66 201 aa3.6□□□□□ -1.83
NPHP4-209ENST00000489180 KRTAP4-2Q9BYR5 136 aa3.6□□□□□ -1.83
NPHP4-209ENST00000489180 KRTAP5-4Q6L8H1 288 aa3.45□□□□□ -1.86
NPHP4-209ENST00000489180 GPR98Q8WXG9 6306 aa3.3□□□□□ -1.88
NPHP4-209ENST00000489180 MUC5ACP98088 5654 aa3.14□□□□□ -1.91
NPHP4-209ENST00000489180 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
NPHP4-209ENST00000489180 HMCN1Q96RW7 5635 aa2.95□□□□□ -1.94
NPHP4-209ENST00000489180 KRTAP5-10Q6L8G5 202 aa2.86□□□□□ -1.95
NPHP4-209ENST00000489180 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
NPHP4-209ENST00000489180 AHNAK2Q8IVF2 5795 aa2.77□□□□□ -1.97
NPHP4-209ENST00000489180 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
NPHP4-209ENST00000489180 MUC5BQ9HC84 5762 aaPredicted RBP2.55□□□□□ -2
NPHP4-209ENST00000489180 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
NPHP4-209ENST00000489180 PHGR1C9JFL3 82 aa2.52□□□□□ -2.01
NPHP4-209ENST00000489180 KRTAP5-11Q6L8G4 156 aa2.44□□□□□ -2.02
NPHP4-209ENST00000489180 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
NPHP4-209ENST00000489180 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.03
NPHP4-209ENST00000489180 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
NPHP4-209ENST00000489180 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.12□□□□□ -2.07
NPHP4-209ENST00000489180 KRTAP5-7Q6L8G8 165 aa1.92□□□□□ -2.1
NPHP4-209ENST00000489180 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 160 ms